Nonextensive diffusion as nonlinear response

The porous media equation has been proposed as a phenomenological ``non-extensive'' generalization of classical diffusion. Here, we show that a very similar equation can be derived, in a systematic manner, for a classical fluid by assuming nonlinear response, i.e. that the diffusive flux depends on gradients of a power of the concentration. The present equation distinguishes from the porous media equation in that it describes \emph{% generalized classical} diffusion, i.e. with $r/\sqrt Dt$ scaling, but with a generalized Einstein relation, and with power-law probability distributions typical of nonextensive statistical mechanics

Lattice gas with ``interaction potential''

We present an extension of a simple automaton model to incorporate non-local interactions extending over a spatial range in lattice gases. {}From the viewpoint of Statistical Mechanics, the lattice gas with interaction range may serve as a prototype for non-ideal gas behavior. {}From the density fluctuations correlation function, we obtain a quantity which is identified as a potential of mean force. Equilibrium and transport properties are computed theoretically and by numerical simulations to establish the validity of the model at macroscopic scale.Comment: 12 pages LaTeX, figures available on demand ([email protected]

Questioning the validity of non-extensive thermodynamics for classical Hamiltonian systems

We examine the non-extensive approach to the statistical mechanics of Hamiltonian systems with $H=T+V$ where $T$ is the classical kinetic energy. Our analysis starts from the basics of the formalism by applying the standard variational method for maximizing the entropy subject to the average energy and normalization constraints. The analytical results show (i) that the non-extensive thermodynamics formalism should be called into question to explain experimental results described by extended exponential distributions exhibiting long tails, i.e. $q$-exponentials with $q>1$, and (ii) that in the thermodynamic limit the theory is only consistent in the range $0\leq q\leq1$ where the distribution has finite support, thus implying that configurations with e.g. energy above some limit have zero probability, which is at variance with the physics of systems in contact with a heat reservoir. We also discuss the ($q$-dependent) thermodynamic temperature and the generalized specific heat.Comment: To appear in EuroPhysics Letter

Is the Tsallis entropy stable?

The question of whether the Tsallis entropy is Lesche-stable is revisited. It is argued that when physical averages are computed with the escort probabilities, the correct application of the concept of Lesche-stability requires use of the escort probabilities. As a consequence, as shown here, the Tsallis entropy is unstable but the thermodynamic averages are stable. We further show that Lesche stability as well as thermodynamic stability can be obtained if the homogeneous entropy is used as the basis of the formulation of non-extensive thermodynamics. In this approach, the escort distribution arises naturally as a secondary structure.Comment: 6 page

"Blue energy" from ion adsorption and electrode charging in sea- and river water

A huge amount of entropy is produced at places where fresh water and seawater mix, for example at river mouths. This mixing process is a potentially enormous source of sustainable energy, provided it is harnessed properly, for instance by a cyclic charging and discharging process of porous electrodes immersed in salt and fresh water, respectively [D. Brogioli, Phys. Rev. Lett. 103, 058501 (2009)]. Here we employ a modified Poisson-Boltzmann free-energy density functional to calculate the ionic adsorption and desorption onto and from the charged electrodes, from which the electric work of a cycle is deduced. We propose optimal (most efficient) cycles for two given salt baths involving two canonical and two grand-canonical (dis)charging paths, in analogy to the well-known Carnot cycle for heat-to-work conversion from two heat baths involving two isothermal and two adiabatic paths. We also suggest a slightly modified cycle which can be applied in cases that the stream of fresh water is limited.Comment: 7 Figure

A repulsive reference potential reproducing the dynamics of a liquid with attractions

A well-known result of liquid state theory is that the structure of dense fluids is mainly determined by repulsive forces. The WCA potential, which cuts intermolecular potentials at their minima, is therefore often used as a reference. However, this reference gives quite wrong results for the viscous dynamics of the Kob-Andersen binary Lennard-Jones liquid [Berthier and Tarjus, Phys. Rev. Lett. 103, 170601 (2009)]. We show that repulsive inverse-power law potentials provide a useful reference for this liquid by reproducing its structure, dynamics, and isochoric heat capacity

Breakdown of Hydrodynamic Transport Theory in the Ordered Phase of Helimagnets

It is shown that strong fluctuations preclude a hydrodynamic description of transport phenomena in helimagnets, such as MnSi, at T>0. This breakdown of hydrodynamics is analogous to the one in chiral liquid crystals. Mode-mode coupling effects lead to infinite renormalizations of various transport coefficients, and the actual macroscopic description is nonlocal. At T=0 these effects are weakened due to the fluctuation-dissipation theorem, and the renormalizations remain finite. Observable consequences of these results, as manifested in the neutron scattering cross-section, are discussedComment: 4pp., 1 eps figur

The RES complex is required for efficient transformation of the precatalytic B spliceosome into an activated Bact complex.

The precise function of the trimeric retention and splicing (RES) complex in pre-mRNA splicing remains unclear. Here we dissected the role of RES during the assembly and activation of yeast spliceosomes. The efficiency of pre-mRNA splicing was significantly lower in the absence of the RES protein Snu17, and the recruitment of its binding partners, Pml1 (pre-mRNA leakage protein 1) and Bud13 (bud site selection protein 13), to the spliceosome was either abolished or substantially reduced. RES was not required for the assembly of spliceosomal B complexes, but its absence hindered efficient Bact complex formation. ΔRES spliceosomes were no longer strictly dependent on Prp2 activity for their catalytic activation, suggesting that they are structurally compromised. Addition of Prp2, Spp2, and UTP to affinity-purified ΔRES B or a mixture of B/Bact complexes formed on wild-type pre-mRNA led to their disassembly. However, no substantial disassembly was observed with ΔRES spliceosomes formed on a truncated pre-mRNA that allows Prp2 binding but blocks its activity. Thus, in the absence of RES, Prp2 appears to bind prematurely, leading to the disassembly of the ΔRES B complexes to which it binds. Our data suggest that Prp2 can dismantle B complexes with an aberrant protein composition, suggesting that it may proofread the spliceosome's RNP structure prior to activation