Non-stationary patterns of isolation-by-distance: inferring measures of local genetic differentiation with Bayesian kriging

Patterns of isolation-by-distance arise when population differentiation increases with increasing geographic distances. Patterns of isolation-by-distance are usually caused by local spatial dispersal, which explains why differences of allele frequencies between populations accumulate with distance. However, spatial variations of demographic parameters such as migration rate or population density can generate non-stationary patterns of isolation-by-distance where the rate at which genetic differentiation accumulates varies across space. To characterize non-stationary patterns of isolation-by-distance, we infer local genetic differentiation based on Bayesian kriging. Local genetic differentiation for a sampled population is defined as the average genetic differentiation between the sampled population and fictive neighboring populations. To avoid defining populations in advance, the method can also be applied at the scale of individuals making it relevant for landscape genetics. Inference of local genetic differentiation relies on a matrix of pairwise similarity or dissimilarity between populations or individuals such as matrices of FST between pairs of populations. Simulation studies show that maps of local genetic differentiation can reveal barriers to gene flow but also other patterns such as continuous variations of gene flow across habitat. The potential of the method is illustrated with 2 data sets: genome-wide SNP data for human Swedish populations and AFLP markers for alpine plant species. The software LocalDiff implementing the method is available at http://membres-timc.imag.fr/Michael.Blum/LocalDiff.htmlComment: In press, Evolution 201

Continuous measurement of shock velocity using a microwave technique

Microwave technique for continuous measurement of shock wave velocit

The mean, variance and limiting distribution of two statistics sensitive to phylogenetic tree balance

For two decades, the Colless index has been the most frequently used statistic for assessing the balance of phylogenetic trees. In this article, this statistic is studied under the Yule and uniform model of phylogenetic trees. The main tool of analysis is a coupling argument with another well-known index called the Sackin statistic. Asymptotics for the mean, variance and covariance of these two statistics are obtained, as well as their limiting joint distribution for large phylogenies. Under the Yule model, the limiting distribution arises as a solution of a functional fixed point equation. Under the uniform model, the limiting distribution is the Airy distribution. The cornerstone of this study is the fact that the probabilistic models for phylogenetic trees are strongly related to the random permutation and the Catalan models for binary search trees.Comment: Published at http://dx.doi.org/10.1214/105051606000000547 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org

Growth of Dust as the Initial Step Toward Planet Formation

We discuss the results of laboratory measurements and theoretical models concerning the aggregation of dust in protoplanetary disks, as the initial step toward planet formation. Small particles easily stick when they collide and form aggregates with an open, often fractal structure, depending on the growth process. Larger particles are still expected to grow at collision velocities of about 1m/s. Experiments also show that, after an intermezzo of destructive velocities, high collision velocities above 10m/s on porous materials again lead to net growth of the target. Considerations of dust-gas interactions show that collision velocities for particles not too different in surface-to-mass ratio remain limited up to sizes about 1m, and growth seems to be guaranteed to reach these sizes quickly and easily. For meter sizes, coupling to nebula turbulence makes destructive processes more likely. Global aggregation models show that in a turbulent nebula, small particles are swept up too fast to be consistent with observations of disks. An extended phase may therefore exist in the nebula during which the small particle component is kept alive through collisions driven by turbulence which frustrates growth to planetesimals until conditions are more favorable for one or more reasons.Comment: Protostars and Planets V (PPV) review. 18 pages, 5 figure

Numerical simulation of viscous supersonic flow over a generic fighter configuration

A procedure is presented, as well as some results, to calculate the flow over a generic fighter configuration. A parabolized marching Navier-Stokes code is used to obtain the solution over a wing-canopy body. The flow conditions simulate supersonic cruise with a freestream Mach number of 2.169 and angles of attack of 4 and 10 deg. The body surface is considered to be an adiabatic wall and the flow is assumed to be turbulent for the given Reynolds number

Golden Ratio Prediction for Solar Neutrino Mixing

It has recently been speculated that the solar neutrino mixing angle is connected to the golden ratio phi. Two such proposals have been made, cot theta_{12} = phi and cos theta_{12} = phi/2. We compare these Ansatze and discuss a model leading to cos theta_{12} = phi/2 based on the dihedral group D_{10}. This symmetry is a natural candidate because the angle in the expression cos theta_{12} = phi/2 is simply pi/5, or 36 degrees. This is the exterior angle of a decagon and D_{10} is its rotational symmetry group. We also estimate radiative corrections to the golden ratio predictions.Comment: 15 pages, 1 figure. Matches published versio