Methane oxidation and emission in Lake Lugano (Southern Switzerland) : a lipid biomarker and isotopic approach

Methane is an important greenhouse gas in Earth's atmosphere. The sources of atmospheric methane are largely biogenic, being produced under anoxic conditions by methanogenic Archaea. Wetlands, which include lakes, are important contributors to the atmospheric methane budget, since they commonly feature anoxic sediments or bottom water. Methane oxidising bacteria at the interface between oxic and anoxic sediments and water limit the efflux of methane. Furthermore, in the oceans, methane is oxidised anaerobically by Archaea, in a process coupled to sulfate reduction. In freshwater environments, where sulfate concentrations are orders of magnitude lower, this process is not thermodynamically favourable, and archaeal anaerobic oxidation of methane is often absent. It has been proposed in certain lake environments, however, that anaerobic oxidation of methane does take place. One lake in which anaerobic oxidation of methane was proposed is the northern basin of Lake Lugano, southern Switzerland. Anaerobic oxidation of methane in this basin is explored in chapter 2 of this PhD thesis. Indeed we found methane concentration and carbon isotopic composition profiles characteristic of methane oxidation in the anoxic hypolimnion, more than 30 m below the interface between the oxic and anoxic waters. In addition, microbial biomass at these depths showed carbon isotope signatures of methane-derived carbon (d13C-values as low as -70‰ in C16:1 fatty acids), indicating that methane is used as a carbon source. However, no methane oxidation took place in incubation experiments under anoxic conditions. Addition of alternative potential electron acceptors did not stimulate methane oxidation, and methane oxidation was only observed in the presence of oxygen. Instead, we propose that episodic introduction of oxygenated water into the anoxic hypolimnion sustains a community of aerobic methanotrophs. Carbon derived from methane oxidation has been shown in several studies to constitute an important carbon input to aquatic ecosystems. In the studies reported in chapters 2 and 3, compound specific stable carbon isotope analysis of lipid biomarkers was used to trace methane-derived carbon through the ecosystems at redox interfaces and in the anoxic hypolimnion of Lake Lugano. In the monomictic southern basin (chapter 3), an anoxic benthic nepheloid layer develops during the period of water column stratification. This layer was found to be derived from microbial production in the hypolimnion. Methane oxidising bacteria constituted up to 30% of total microbial cell numbers in the nepheloid layer, and 77% to 96% of the organic carbon in this layer was methane-derived. High rates of aerobic methane oxidation at the top of the anoxic nepheloid layer led to an oxygen consumption that was greater than the downward diffusion, causing the anoxic nepheloid layer to expand. Bacterial aerobic methanotrophs migrate upwards through the water column with the interface between the oxic hypolimnion and the anoxic nepheloid layer. The extent of emission of methane to the atmosphere depends on the totality of sinks and sources in the lake basin. In both the northern and the southern basin of Lake Lugano, large amounts of methane are emitted from the sediments into the bottom water. However, consumption by aerobic methanotrophs at the oxic-anoxic redoxcline is near complete, and during stratified conditions, no methane escapes to the epilimnion. On the other hand, methane super-saturation in the surface water was observed throughout the year. Chapter 4 describes the results of three mapping campaigns of surface water methane concentrations in the northern basin of Lake Lugano, in spring and autumn. Additionally, methane concentration and carbon isotopic composition were measured on depth profiles down to 40 m depth in transects across the lake basin. Methane fluxes to the atmosphere were calculated from surface water concentration and wind speed. At a standardised wind speed of 1.6 m s-1 (average wind speed during the period from May until October) fluxes to the atmosphere were significantly higher in autumn (44 and 97 micromol m-2 d-1 in October 2011 and October 2012, respectively) than in spring (7 micromol m-2 d-1, May 2012). This difference is in part due to higher concentrations in autumn than in spring, and in part a result of a stronger dependence of the transfer velocity on buoyancy flux when the surface water cools. The source of methane in the surface water could not be determined with certainty. It is possible that internal waves at the thermocline induce friction at the sediment-water interface in the littoral zone, which leads to increased outgassing of sedimentary methane. However, the northern basin of Lake Lugano has steep shores along large parts of the basin, which offer little space for deposition of sediments, and the possibility of in situ production of methane in the water column must be considered

Field-scale labelling and activity quantification of methane-oxidizing bacteria in a landfill-cover soil

Aerobic methane-oxidizing bacteria (MOB) play an important role in soils, mitigating emissions of the greenhouse gas methane (CH4) to the atmosphere. Here, we combined stable isotope probing on MOB-specific phospholipid fatty acids (PLFA-SIP) with field-based gas push-pull tests (GPPTs). This novel approach (SIP-GPPT) was tested in a landfill-cover soil at four locations with different MOB activity. Potential oxidation rates derived from regular- and SIP-GPPTs agreed well and ranged from 0.2 to 52.8 mmol CH4 (L soil air)−1 day−1. PLFA profiles of soil extracts mainly contained C14 to C18 fatty acids (FAs), with a dominance of C16 FAs. Uptake of 13C into MOB biomass during SIP-GPPTs was clearly indicated by increased δ13C values (up to c. 1500‰) of MOB-characteristic FAs. In addition, 13C incorporation increased with CH4 oxidation rates. In general, FAs C14:0, C16:1ω8, C16:1ω7 and C16:1ω6 (type I MOB) showed highest 13C incorporation, while substantial 13C incorporation into FAs C18:1ω8 and C18:1ω7 (type II MOB) was only observed at high-activity locations. Our findings demonstrate the applicability of the SIP-GPPT approach for in situ quantification of potential CH4 oxidation rates and simultaneous labelling of active MOB, suggesting a dominance of type I MOB over type II MOB in the CH4-oxidizing community in this landfill-cover soi

Pore water concentrations and solid phase concentrations of sediment cores from the Ligurian continental slope

In October 1979, a period of heavy rainfall along the French Riviera was followed by the collapse of the Ligurian continental slope adjacent to the airport of Nice, France. A body of slope sediments, which was shortly beforehand affected by construction work south of the airport, was mobilized and traveled hundreds of kilometers downslope into the Var submarine canyon and, eventually, into the deep Ligurian basin. As a direct consequence, the construction was destroyed, seafloor cables were torn, and a small tsunami hit Antibes shortly after the failure. Hypotheses regarding the trigger mechanism include (i) vertical loading by construction of an embankment south of the airport, (ii) failure of a layer of sensitive clay within the slope sequence, and (iii) excess pore fluid pressures from charged aquifers in the underground. Over the previous decades, both the sensitive clay layers and the permeable sand and gravel layers were sampled to detect freshened waters. In 2007, the landslide scar and adjacent slopes were revisited for high-resolution seafloor mapping and systematic sampling. Results from half a dozen gravity and push cores in the shallow slope area reveal a limited zone of freshening (i.e. groundwater influence). A 100-250 m wide zone of the margin shows pore water salinities of 5-50% SW concentration and depletion in Cl, SO4, but Cr enrichment, while cores east or west of the landslide scar show regular SW profiles. Most interestingly, the three cores inside the landslide scar hint towards a complex hydrological system with at least two sources for groundwater. The aquifer system also showed strong freshening after a period of several months without significant precipitation. This freshening implies that charged coarse-grained layers represent a permanent threat to the slope's stability, not just after periods of major rainfall such as in October 1979

Influence of macronutrient composition of commercial diets on circulating leptin and adiponectin concentrations in overweight dogs

Leptin and adiponectin play important roles in obesity-related inflammation and comorbidities. Previous research suggests that alterations in dietary macronutrient composition can modify circulating leptin and adiponectin concentrations in people, but limited research on this subject has been performed in dogs. This study investigated the effects of commercial high protein (HP), high fat (HF) and high carbohydrate medium protein (HCMP) diets on baseline (T-1 ) concentrations, post-prandial peak concentrations and total release in a ten-hour time span of leptin and adiponectin in dogs, when compared to a maintenance high carbohydrate low protein (HCLP) diet. Thirty-six overweight dogs were fed the HCLP diet in a one-week control period, after which the animals were assigned to one of three groups. In three four-week periods, each group was fed all test diets in a different sequence. At the last day of each period, blood was sampled at one hour before feeding (T-1 ) and at three (T3 ), six (T6 ) and nine (T9 ) hours after feeding. Feeding caused peak leptin concentrations at T6 and T9 (p < .001). No significant post-prandial change in adiponectin concentrations was found (p = .056). The HP diet resulted in lower leptin peak concentrations (p = .004) and AUCT-1-T9 (p = .01), but none of the diets influenced baseline leptin concentrations (p = .273). Baseline adiponectin concentrations were lower for the HF diet (p = .018) and HCMP (p < .001), and the HP, HF and HCMP AUCT-1-T9 (p < .001) were lower compared with the HCLP diet. Female dogs had lower adiponectin baseline concentrations (p = .041) and AUCT-1-T9 (p = .023) than male dogs. In conclusion, the HP diet was associated with the lowest post-prandial peak leptin concentration and the least decrease in adiponectin release, suggesting that a HP diet may improve immune-metabolic health and post-prandial satiety in overweight dogs

Spatial variations in surface water methane super-saturation and emission in Lake Lugano, southern Switzerland

We measured methane concentrations in the surface water of the northern basin of Lake Lugano in spring (May 2012) and autumn (October 2011, 2012), and calculated turbulent diffusive methane fluxes to the atmosphere. Surface water methane concentrations were highly variable in space and time but always exceeded atmospheric equilibrium. Methane concentrations were significantly lower in spring (on average 16nmolL−1) than during the autumn sampling campaigns (on average 57nmolL−1 in 2011 and 45nmolL−1 in 2012). This suggests methane accumulation in the surface mixed layer during the summer productive season. The origin of the methane in the lake's surface waters requires further assessment, but the observed concentration profiles indicate that the excess methane originates from a near-surface source, rather than from the large deep-water methane pool in the anoxic monimolimnion. As a consequence of the higher surface water methane concentrations and increased buoyancy turbulence caused by autumnal cooling of the surface boundary layer, diffusive fluxes were much higher in October (average ~97μmolm−2day−1, compared to 7μmolm−2day−1 in May 2012). The increase in methane concentration in the surface water between spring and autumn suggests links between methane accumulation and the annual biological cycle, yet seasonal changes in wind and temperature forcing of methane emission likely play an important modulating role. While the relative importance of biological versus physical controls on methane emission in Lake Lugano awaits further investigations, our study underscores that lakes can act as an important source of methane to the atmosphere, even when the lake-internal microbial methane filter in the water column seems to work efficiently