Constraints and breeding priorities for increased sweetpotato utilization in Ghana

Sweetpotato is used in various food preparations in place of rice, cassava, yam and plantain in Ghana. In spite of this it does not have the same importance in Ghanaian diet as other root and tuber crops. Consumer taste, preference and acceptance are critical in determining the suitability of sweetpotato cultivars to any locality. A study was carried out in some selected communities of Ghana where sweetpotato is popular which span all five ecozones of Ghana in February, 2012. The main objective was to investigate why sweetpotato has low utilization compared with other root and tuber crops and to increase its utilization through breeding. The study employed Focus Group Discussion (FGD) followed by administration of Semi-structured Questionnaire (SSQ). Data collected were analysed using Genstat and Statistical Package for Social Sciences. Seventy-nine people consisting of 63% males and 37% females, and 178 people consisting of 52% female and 48% males were involved in the FGD and SSQ, respectively. Majority (94%) of farmers’ ranked sweetpotato from 1 to 5 among 24 cultivated crops. Only about 28% of consumers ate sweetpotato at least six days per week. The survey revealed that consumers in Ghana desired non-sweet, high dry matter sweetpotato cultivars. Therefore, there is need for Research and Development to adjust sweetpotato breeding objectives and selection procedures to develop high dry matter non-sweet sweetpotato varieties in Ghan

Evaluation of sweetpotato accessions for end-user preferred traits improvement

This study assessed the genetic diversity and differentiation in sweetpotato accessions in Ghana to guide selection for genetic improvement on beta-carotene, dry matter and sugar contents to promote increased utilization. One hundred and fifteen sweetpotato accessions from four different sources, which were the International Potato Centre (CIP) collection, local collection from farmers’ field, local improved varieties, and local and exotic collections from the National Agricultural Research Programmes were studied using 40 agro-morphological and physico-chemical traits, and 25 SSR markers. Variability was obtained for 13 agro-morphological traits and all the physico-chemical traits. Significant genetic diversity indicates existence of a high degree of agro-morphological and physicochemical variation. Within Group variation (97%) accounted for most of the diversity indicating a broad genetic base. The divergence indicates that breeders can form different populations with significant levels of genetic variation to exploit heterosis and improvement of populations. A strong negative relationship was found for sugar content and dry matter content and indicates a possible development of non-sweet high dry matter sweetpotato varieties. However, developing non-sweet, high dry matter and high beta-carotene sweetpotato varieties could be challenging due to the strong negative association between dry matter content and beta-carotene content, and the positive association existing between beta-carotene and sugar content. This study has in addition confirmed the breeding potential of sweetpotato accessions in Ghana and the probability of providing useful genetic variation for the development of farmer preferred cultivar

Genetic diversity among early provitamin A quality protein maize inbred lines and the performance of derived hybrids under contrasting nitrogen environments

Open Access JournalInformation on population structure and genetic diversity of germplasm in a breeding programme is useful because it enhances judicious utilisation of genetic resources to achieve breeding objectives. Seventy early maturing provitamin A (PVA) quality protein maize (QPM) inbreds developed by the IITA- maize improvement programme were genotyped using 8171 DArTseq markers. Furthermore, 96 hybrids derived from 24 selected inbreds plus four checks were evaluated under low-N and optimal environments in Nigeria during 2016 and 2017. Genotypic and phenotypic data of inbreds and hybrids respectively, were analysed to (i) assess the level of genetic dissimilarities and population structure of the inbreds, and (ii) investigate the grain yield performance of derived hybrids under low-N, optimal and across environments

Marker Assisted Foreground Selection for Identification of Striga Resistant Backcross Lines in Sorghum bicolor

Striga is a major constraint to sorghum production causing high yield loss due to increasing infestation. Locally-adapted cultivars with resistant genes/QTLs could be an effective control strategy for Striga. Marker-Assisted Foreground Selection was used to select backcross lines possessing Striga resistance QTLs from N13. Marker polymorphism was conducted for the donor parent N13 and 10 recurrent parents using 10 Simple Sequence Repeat (SSR) markers. Recurrent parents with SSR alleles, polymorphic to the donor parent allele were selected. F1 lines were developed by making a cross between the selected recurrent parent and the donor. The F1 were confirmed for heterozygosity using SSR markers. Selected heterozygote F1s were backcrossed to their recurrent parent to develop backcross populations (BC1F1 and BC2F1). BC1F1 and BC2F1 populations were genotyped using SSR markers flanking the Striga resistant QTLs in N13. Forty two DANYANA-N13 BC2F1 lines (with 4 QTLs in 3 lines, 3 QTLs in 10 lines and other 28 lines having 1 to 2 QTLs) were selected for the presence of N13 QTLs. Forty three SAMSORG39-N13 BC2F1 lines (with 3 QTLs in 2 lines while 41 lines had 1 to 2 QTLs) were also selected for the presence of N13 QTLs. Although, selected lines will be genotyped for the recovery of recurrent parent background and evaluated to identify elite genotypes for possible release as varieties, the successful introgression of Striga resistance QTLs using Marker Assisted Selection suggests that in developing superior sorghum varieties, breeders could make use of molecular marker technologies to speed up breeding programmes

Phenotypic characterization and validation of provitamin A functional genes in early maturing provitamin A-quality protein maize (Zea mays) inbred lines

Open Access Article; Published online: 20 Dec 2019The number of drought and low‐N tolerant hybrids with elevated levels of provitamin A (PVA) in sub‐Saharan Africa could increase when PVA genes are optimized and validated for developed drought and low‐N tolerant inbred lines. This study aimed to (a) determine the levels of drought and low‐N tolerance, and PVA concentrations in early maturing PVA‐quality protein maize (QPM) inbred lines, and (b) identify lines harbouring the crtRB1 and LcyE genes as sources of favourable alleles of PVA. Seventy early maturing PVA‐QPM inbreds were evaluated under drought, low‐N and optimal environments in Nigeria for two years. The inbreds were assayed for PVA levels and the presence of PVA genes using allele‐specific PCR markers. Moderate range of PVA contents was observed for the inbreds. Nonetheless, TZEIORQ 55 combined high PVA concentration with drought and low‐N tolerance. The crtRB1‐3′TE primer and the KASP SNP (snpZM0015) consistently identified nine inbreds including TZEIORQ 55 harbouring the favourable alleles of the crtRB1 gene. These inbreds could serve as donor parents of the favourable crtRB1‐3′TE allele for PVA breeding in maize

Genetic analysis of grain yield and agronomic traits of early provitamin A quality protein maize inbred lines in contrasting environments

Open Access Article; Published online: 17 Oct 2019Early-maturing provitamin A (PVA) quality protein maize (QPM) hybrids with combined drought and low soil nitrogen (low-N) tolerance are needed to address malnutrition and food security problems in sub-Saharan Africa (SSA). The current study's objectives were to (i) examine combining ability of selected early maturing PVA-QPM inbreds for grain yield and other agronomic traits under drought, low-N, optimal environments and across environments, (ii) determine gene action conditioning PVA accumulation under optimal environments, (iii) classify inbreds into heterotic groups and identify testers and (iv) assess yield and stability of hybrids across environments. Ninety-six hybrids generated from 24 inbred lines using the North Carolina Design II together with four commercial hybrid controls were evaluated under drought, low-N and optimal environments in Nigeria in 2016 and 2017. Fifty-four selected hybrids were assayed for PVA carotenoid and tryptophan content. Additive genetic effects were greater than non-additive effects for grain yield and most agronomic traits under each and across environments. The gene action conditioning accumulation of PVA carotenoids under optimal growing conditions followed a pattern similar to that of grain yield and other yield-related traits. The inbred lines were categorized into four heterotic groups consistent with the pedigree records and with TZEIORQ 29 identified as the best male and female tester for heterotic group IV. No tester was found for the other groups. Hybrid TZEIORQ 24 × TZEIORQ 41 was the highest yielding and most stable across environments and should be further tested for consistent performance for commercialization in SSA

Genetic characterization of cassava (Manihot esculenta Crantz) genotypes using agro-morphological and single nucleotide polymorphism markers

Open Access Article; Published online: 23 Dec 2019Dearth of information on extent of genetic variability in cassava limits the genetic improvement of cassava genotypes in Sierra Leone. The aim of this study was to assess the genetic diversity and relationships within 102 cassava genotypes using agro-morphological and single nucleotide polymorphism markers. Morphological classification based on qualitative traits categorized the germplasm into five different groups, whereas the quantitative trait set had four groups. The SNP markers classified the germplasm into three main cluster groups. A total of seven principal components (PCs) in the qualitative and four PCs in the quantitative trait sets accounted for 79.03% and 72.30% of the total genetic variation, respectively. Significant and positive correlations were observed between average yield per plant and harvest index (r = 0.76***), number of storage roots per plant and harvest index (r = 0.33*), height at first branching and harvest index (0.26*), number of storage roots per plant and average yield per plant (r = 0.58*), height at first branching and average yield per plant (r = 0.24*), length of leaf lobe and petiole length (r = 0.38*), number of leaf lobe and petiole length (r = 0.31*), width of leaf lobe and length of leaf lobe (r = 0.36*), number of leaf lobe and length of leaf lobe (r = 0.43*), starch content and dry matter content (r = 0.99***), number of leaf lobe and root dry matter (r = 0.30*), number of leaf lobe and starch content (r = 0.28*), and height at first branching and plant height (r = 0.45**). Findings are useful for conservation, management, short term recommendation for release and genetic improvement of the crop

Genetic diversity of provitamin-A cassava (Manihot esculenta Crantz) in Sierra Leone

Open Access Article; Published online: 04 Mar 2020Understanding the genetic diversity among accessions and germplasm is an important requirement for crop development as it allows for the selection of diverse parental combinations for enhancing genetic gain in varietal selection, advancement and release. The study aimed to characterize 183 provitamin A cassava (Manihot esculenta Crantz) accessions and five Sierra Leonean varieties using morphological traits, total carotenoid content and SNP markers to develop a collection for conservation and further use in the cassava breeding program. Both morphological parameters and 5634 SNP markers were used to assess the diversity among the provitamin-A cassava accessions and varieties. Significant differences were observed among the accessions for most of the traits measured. The first five PCs together accounted for 70.44% of the total phenotypic variation based on yield and yield components among the 183 provitamin-A cassava accessions and five Sierra Leonean varieties. The present study showed that provitamin-A cassava accessions in Sierra Leone have moderate to high diversity based on morphological and molecular assessment studies. The similarity index among the 187 and 185 cassava accessions grouped them into 6 and 9 distinct clusters based on morphological and molecular analyses, respectively. A significant positive, but low correlation (r = 0.104; p\0.034), was observed between the two dendrograms. The results obtained will serve as a guide and basis of germplasm management and improvement for total carotenoid content, yield and African cassava mosaic disease resistance in Sierra Leone

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Inter-relationships between agronomic traits and fruit yield in scarlet eggplant (Solanum aethiopicum (L.) Gilo group).

Genotypic correlations and path–coefficients were determined for nine yield-related agronomic traits using 10 accessions of scarlet eggplant. There were significant (p < 0.05) differences among the 10 accessions for all traits and differences were largely due to genetic effects. There was no significant positive correlation of any trait with fruit yield, but number of days to flowering, plant height at flowering and number of days to fruit maturity were significantly (p < 0.05) and negatively correlated with fruit yield. Path-coefficient analyses showed that number of fruits per plant had the highest direct effect on fruit yield, followed by fruit diameter..