DESIGN ENHANCEMENT AND INTEGRATION OF A PROCESSOR-MEMORY INTERCONNECT NETWORK INTO A SINGLE-CHIP MULTIPROCESSOR ARCHITECTURE

This thesis involves modeling, design, Hardware Description Language (HDL) design capture, synthesis, implementation and HDL virtual prototype simulation validation of an interconnect network for a Hybrid Data/Command Driven Computer Architecture (HDCA) system. The HDCA is a single-chip shared memory multiprocessor architecture system. Various candidate processor-memory interconnect topologies that may meet the requirements of the HDCA system are studied and evaluated related to utilization within the HDCA system. It is determined that the Crossbar network topology best meets the HDCA system requirements and it is therefore used as the processormemory interconnect network of the HDCA system. The design capture, synthesis, implementation and HDL simulation is done in VHDL using XILINX ISE 6.2.3i and ModelSim 5.7g CAD softwares. The design is validated by individually testing against some possible test cases and then integrated into the HDCA system and validated against two different applications. The inclusion of crossbar switch in the HDCA architecture involved major modifications to the HDCA system and some minor changes in the design of the switch. Virtual Prototype testing of the HDCA executing applications when utilizing crossbar interconnect revealed proper functioning of the interconnect and HDCA. Inclusion of the interconnect into the HDCA now allows it to implement dynamic node level reconfigurability and multiple forking functionality

Prenatal Diagnosis of WAGR Syndrome.

Wilm's tumour, aniridia, genitourinary abnormalities, and mental retardation (WAGR) syndrome is a rare genetic disorder with an estimated prevalence of 1 in 500,000 to 1 million. It is a contiguous gene syndrome due to deletion at chromosome 11p13 in a region containing WT1 and PAX6 genes. Children with WAGR syndrome mostly present in the newborn/infancy period with sporadic aniridia. The genotypic defects in WAGR syndrome have been well established. However, antenatal ultrasonographic presentation of this syndrome has never been reported. Prenatal diagnosis of this condition is possible in some cases with careful ultrasound examination of classical and nonclassical manifestations of this syndrome. The key point for this rare diagnosis was the decision to perform chromosomal microarray analysis after antenatal diagnosis of absent corpus callosum and absent cavum septum pellucidum, as this finding mandates search for potentially associated genetic disorders. We report a case of WAGR syndrome diagnosed prenatally at 29-week gestation. The diagnosis of the anomaly was based on two- and three-dimensional ultrasound as well as fetal MRI scan and microarray analysis. The ultrasonographic findings included borderline ventriculomegaly, absent corpus callosum, and absent cavum septum pellucidum. Cytogenetic results from the amniotic fluid confirmed WAGR syndrome. Parental karyotype was normal, with no evidence of copy number change, deletion, or rearrangement of this region of chromosome 11

Ocean-atmosphere interaction and synoptic weather conditions in association with the two contrasting phases of monsoon during BOBMEX-1999

Surface meteorological parameters acquired during the field phase experiment, BOBMEX-99, for the stationary periods (SP I and II) of the ship ORV Sagar Kanya over Bay of Bengal have been analysed. Active and weak monsoon conditions were observed during the first and the second phase of the experiment respectively over India as well as over the stationary ship location. The phase mean sea surface temperature (SST) is found to be the same in both the phases, however large differences have been observed in the phase mean values of wind speed, mean sea level pressure, latent heat and momentum fluxes at air-sea interface. Synoptic scale monsoon disturbances formed only during the period of strong north-south pressure gradient over the Bay region. Events of prominent fall in SST and in the upper 15 m ocean layer mean temperature and salinity values during typical rainfall events are cited. The impact of monsoon disturbances on ocean-atmosphere interface transfer processes has been investigated

Knowledge, attitude and practices of general practitioners about use of antiviral drugs in viral infections other than HIV

Background: Antiviral drugs for viral infections other than HIV are effective only for hepatitis, herpes and influenza. It has been observed that general practitioners (GPs) treat viral infections with antibiotics. The use of antibiotics in viral infections is not rational. Hence, authors conducted this study to assess the Knowledge, Attitude and Practices of General Practitioners (GPs) about treatment of viral infections other than HIV.Methods: It was a descriptive, observational, cross- sectional study among 100 GPs in Southern Pune. A pretested questionnaire was used to assess their knowledge, attitude and practices about treatment of viral infections other than HIV. Prior informed written consent was taken from the GPs who were grouped under MBBS, BHMS and BAMS categories according to their qualifications. Correct answers among these groups were analysed using chi-square test, Spearman’s coefficient test and ANOVA.Results: The percentages of correct answers in the groups were comparable.56% GPs have poor knowledge of Influenza treatment.30-36% do not treat Herpes genitalis and zoster with antiviral drugs. Authors found that 44%, 30% and 28% of total GPs don’t have proper knowledge, attitude and practice respectively about common viral infections other than HIV and antiviral drugs.Conclusions: GPs are significantly unaware about rational use of antiviral drugs. They have poor knowledge about management of influenza

Genome-wide profiling of histone modifications (H3K9me2 and H4K12ac) and gene expression in rust (uromyces appendiculatus) inoculated common bean (Phaseolus vulgaris L)

Histone modifications such as methylation and acetylation play a significant role in controlling gene expression in unstressed and stressed plants. Genome-wide analysis of such stress-responsive modifications and genes in non-model crops is limited. We report the genome-wide profiling of histone methylation (H3K9me2) and acetylation (H4K12ac) in common bean (Phaseolus vulgaris L.) under rust (Uromyces appendiculatus) stress using two high-throughput approaches, chromatin immunoprecipitation sequencing (ChIP-Seq) and RNA sequencing (RNA-Seq). ChIP-Seq analysis revealed 1,235 and 556 histone methylation and acetylation responsive genes from common bean leaves treated with the rust pathogen at 0, 12 and 84 hour-after-inoculation (hai), while RNA-Seq analysis identified 145 and 1,763 genes differentially expressed between mock-inoculated and inoculated plants. The combined ChIP-Seq and RNA-Seq analyses identified some key defense responsive genes (calmodulin, cytochrome p450, chitinase, DNA Pol II, and LRR) and transcription factors (WRKY, bZIP, MYB, HSFB3, GRAS, NAC, and NMRA) in bean-rust interaction. Differential methylation and acetylation affected a large proportion of stress-responsive genes including resistant (R) proteins, detoxifying enzymes, and genes involved in ion flux and cell death. The genes identified were functionally classified using Gene Ontology (GO) and EuKaryotic Orthologous Groups (KOGs). The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis identified a putative pathway with ten key genes involved in plant-pathogen interactions. This first report of an integrated analysis of histone modifications and gene expression involved in the bean-rust interaction as reported here provides a comprehensive resource for other epigenomic regulation studies in non-model species under stress

Pulsed laser treatment at Fe/C<SUB>6</SUB>H<SUB>6</SUB> interface: a Mossbauer effect study

The pulsed ruby laser induced reactive-quenching process at Fe/C6H6 Ibenzenel has been investigated using conversion electron Mossbauer spectroscopy [CEMS]. It is shown that iron carbide phases can be synthesized when an iron foil immersed in benzene is treated with ruby Laser pulses [&#955;=694 nm, pulse width ~30 ns, energy density =15 J/cm2]. The results indicate the formation of &#949;-carbide and Fe5C2 phases in the as-treated sample and its transformation to Fe3C upon thermal treatment. The result of the CEMS measurements are supported by small angle X-ray diffractometry

A conversion electron Mossbauer spectroscopy study of ion beam mixing at Fe: polyethylene interface

The effects of ion beam induced atomic mixing at the Fe-Polyethylene interface have been investigated by means of conversion electron Mossbauer spectroscopy [CEMS]. It is shown that the as deposited and ion beam mixed composites exhibit distinctly different features. In particular, the ion beam mixed composite shows that presence of Fe2+ state in polyethylene matrix along with the Fe-C austenite like phase

Metatranscriptomic profiles of Eastern subterranean termites, Reticulitermes flavipes (Kollar) fed on second generation feedstocks

Background: Second generation lignocellulosic feedstocks are being considered as an alternative to first generation biofuels that are derived from grain starches and sugars. However, the current pre-treatment methods for second generation biofuel production are inefficient and expensive due to the recalcitrant nature of lignocellulose. In this study, we used the lower termite Reticulitermes flavipes (Kollar), as a model to identify potential pretreatment genes/enzymes specifically adapted for use against agricultural feedstocks. Results: Metatranscriptomic profiling was performed on worker termite guts after feeding on corn stover (CS), soybean residue (SR), or 98% pure cellulose (paper) to identify (i) microbial community, (ii) pathway level and (iii) gene-level responses. Microbial community profiles after CS and SR feeding were different from the paper feeding profile, and protist symbiont abundance decreased significantly in termites feeding on SR and CS relative to paper. Functional profiles after CS feeding were similar to paper and SR; whereas paper and SR showed different profiles. Amino acid and carbohydrate metabolism pathways were downregulated in termites feeding on SR relative to paper and CS. Gene expression analyses showed more significant down regulation of genes after SR feeding relative to paper and CS. Stereotypical lignocellulase genes/enzymes were not differentially expressed, but rather were among the most abundant/constitutively-expressed genes. Conclusions: These results suggest that the effect of CS and SR feeding on termite gut lignocellulase composition is minimal and thus, the most abundantly expressed enzymes appear to encode the best candidate catalysts for use in saccharification of these and related second-generation feedstocks. Further, based on these findings we hypothesize that the most abundantly expressed lignocellulases, rather than those that are differentially expressed have the best potential as pretreatment enzymes for CS and SR feedstocks. © 2015 Rajarapu et al

Comparison of Wavelet Transform and Fourier Transform based methods of Phasor Estimation for Numerical Relaying

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