19 research outputs found
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Occam's Razor and Petascale Visual Data Analysis
One of the central challenges facing visualization research is how to effectively enable knowledge discovery. An effective approach will likely combine application architectures that are capable of running on today?s largest platforms to address the challenges posed by large data with visual data analysis techniques that help find, represent, and effectively convey scientifically interesting features and phenomena
Finishing the euchromatic sequence of the human genome
The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead
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WIPP Case Study - Compliance Monitoring, Passive Institutional Controls, and Record Keeping
The WIPP Case Study describes the compliance monitoring program, record keeping requirements, and passive institutional controls that are used to help ensure the Waste Isolation Pilot Plant (WIPP) will safety contain radioactive waste and indicate dangers and location of the wastes. The radioactive components in the waste are regulated by the U.S. Environmental Protection Agency (EPA) while the hazardous components in the waste are regulated by the New Mexico Environment Department (NMED). This paper addresses monitoring relating to radionuclide containment performance, passive institutional controls, and record keeping over a 10,000-year time frame. Monitoring relating to the hazardous components and the associated regulator are not addressed in this paper. The WIPP containment performance is mandated by release limits set by regulation. Regulations also require the radioactive waste containment performance of the WIPP to be predicted by a ''Performance Assessment.'' The EPA did not base the acceptance of the WIPP solely on predicted containment but included additional assurance measures. One such assurance measure is monitoring, which may be defined as the on-going measurement of conditions in and around the repository. This case study describes the evolution of the WIPP monitoring program as the WIPP project progressed through the planning, site characterization, regulatory promulgation, and eventual operational stages that spanned a period of over 25 years. Included are discussions of the regulatory requirements for monitoring, selection of monitoring parameters, trigger values used to identify unexpected conditions, assessment of monitoring data against the trigger values, and plans for post-closure monitoring. The United EPA established the requirements for Passive Institutional Controls (PICs) for disposal sites. The requirements state the a disposal site must be designated by the most permanent markers, records, and other passive institutional controls practicable to indicate the dangers of the wastes and their location. The PIC Task Force assessed the effectiveness of PICs in deterring inadvertent human intrusion and developed a conceptual design for permanently marking the Waste Isolation Pilot Plant (WIPP), establishing records, and identifying other practicable controls to indicate the dangers of the wastes and their location. The marking system should provide information regarding the location, design, contents, and hazards associated with WIPP. This paper discuss these controls including markers, records, archives, and government ownership and land-use restrictions
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Advanced Scientific Computing Research Network Requirements Review: Final Report 2015
The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of the Office of Science programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 25 years. In April 2015, ESnet and the Office of Advanced Scientific Computing Research (ASCR), of the DOE Office of Science, organized a review to characterize the networking requirements of the programs funded by the ASCR program office. Several key findings resulted from the review - they are discussed in this report, along with the case studies presented at the review
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A terminology for in situ visualization and analysis systems
The term “in situ processing” has evolved over the last decade to mean both a specific strategy for visualizing and analyzing data and an umbrella term for a processing paradigm. The resulting confusion makes it difficult for visualization and analysis scientists to communicate with each other and with their stakeholders. To address this problem, a group of over 50 experts convened with the goal of standardizing terminology. This paper summarizes their findings and proposes a new terminology for describing in situ systems. An important finding from this group was that in situ systems are best described via multiple, distinct axes: integration type, proximity, access, division of execution, operation controls, and output type. This paper discusses these axes, evaluates existing systems within the axes, and explores how currently used terms relate to the axes