Purification and characterization of Taq polymerase: A 9-week biochemistry laboratory project for undergraduate students

We have developed a 9-week undergraduate laboratory series focused on the purification and characterization of Thermus aquaticus DNA polymerase (Taq). Our aim was to provide undergraduate biochemistry students with a full-semester continuing project simulating a research-like experience, while having each week\u27s procedure focus on a single learning goal. The laboratory series has been taught for the past 7 years, and survey-based assessment of the effectiveness of the laboratory series was completed during the 2006 and 2007 fall semesters. Statistical analysis of the survey results demonstrate that the laboratory series is very effective in teaching students the theory and practice of protein purification and analysis while also demonstrating positive results in more broad areas of scientific skill and knowledge. Amongst the findings, the largest reported increases in knowledge were related to students\u27 understanding of how patent law relates to laboratory science, a topic of great importance to modern researchers that is readily discussed in relation to Taq polymerase. Overall, this laboratory series proves to be a very effective component in the curricula of undergraduate biology and chemistry majors and may be an appropriate laboratory experience for undergraduates. © 2010 by The International Union of Biochemistry and Molecular Biology

A study on PDC drill bits quality

The quality of innovating PDC (Polycrystalline Diamond Compact) bits materials needs to be determined with accuracy by measuring cutting efficiency and wear rate, both related to the overall mechanical properties. An original approach is developed to encompass cutting efficiency and wear contribution to the overall sample quality. Therefore, a lathe-type test device was used to abrade specific samples from various manufacturers. Post-experiment analyzes are based on models establishing coupled relationships between cutting and friction stresses related to the drag bits excavation mechanism. These models are implemented in order to evaluate cutting efficiency and to estimate wear of the diamond insert. Phase analysis by XRD and finite element simulations were performed to explain the role of physicochemical parameters on the calculated quality factor values. Four main properties of PDC material were studied to explain quality results obtained in this study: cobalt content in samples that characterizes hardness/fracture toughness compromise, undesired phase as tungsten carbide weakening diamond structure, diamond grains sizes and residual stresses distribution affecting abrasion resistance

Metastatic Pancreatic Adenocarcinoma After Total Pancreatectomy Islet Autotransplantation for Chronic Pancreatitis

Total pancreatectomy with islet autotransplantation (TPIAT) is being used increasingly as a definitive treatment for chronic pancreatitis. Patients with chronic pancreatitis have an elevated risk of pancreatic cancer, which can also masquerade as acute or chronic pancreatitis, making the diagnosis challenging. We describe here the first case of pancreatic ductal adenocarcinoma developing in the liver of a patient after TPIAT for presumed benign chronic pancreatitis. Retrospective analysis of the patient’s preoperative serum revealed normal carbohydrate antigen 19-9 and carcinoembryonic antigen levels but elevated levels of microRNAs -10b, -30c, and -106b compared with controls. Screening guidelines are important to reduce the risk of transplantation of malignant tissue. More sensitive screening tools, including the potential use of microRNAs, are needed to detect early preclinical disease, given the highly malignant nature of pancreatic cancer

Hydrogen bonding and coordination in normal and supercritical water from X-ray inelastic scattering

A direct measure of hydrogen bonding in water under conditions ranging from the normal state to the supercritical regime is derived from the Compton scattering of inelastically-scattered X-rays. First, we show that a measure of the number of electrons $n_e$ involved in hydrogen bonding at varying thermodynamic conditions can be directly obtained from Compton profile differences. Then, we use first-principles simulations to provide a connection between $n_e$ and the number of hydrogen bonds $n_{HB}$. Our study shows that over the broad range studied the relationship between $n_e$ and $n_{HB}$ is linear, allowing for a direct experimental measure of bonding and coordination in water. In particular, the transition to supercritical state is characterized by a sharp increase in the number of water monomers, but also displays a significant number of residual dimers and trimers.Comment: 14 pages, 5 figures, 1 tabl

Human heart disease: lessons from human pluripotent stem cell-derived cardiomyocytes

Stem cells & developmental biolog

Education in mine waste engineering: the experience of "SIGEO" Master's Course

On 19th July 1985 the failure of two tailings dams at the service of a fluorite mine in the Stava Valley (Italy) caused the death of 268 people and severe environmental and socioeconomic damage. Similar accidents have happened in Sgorigrad (Bulgaria, 1966), Aberfan (U.K., 1966), Buffalo Creek (USA, 1972), Aznalcollar (Spain, 1998), Taoshi (China, 2008) and many other places worldwide. The European Union has recognized the seriousness of the problems concerning the management and disposal of mining waste (over 400 million tonnes per year worldwide). With the 2006/21/CE Directive, the EU has urged all member States to carry out censuses, monitoring and consolidation of existing structures under the supervision of qualified experts. These experts should be provided with interdisciplinary knowledge that is difficult to attain during normal degree courses. For this reason, the Trento and Modena-Reggio Emilia Universities and the Turin Polytechnic have set up a post-graduate Master’s Course in “Analysis and Management of Geotechnical Structures”. The article describes the interdisciplinary approach adopted in the course and aims to stimulate the sharing of this initiative among other European Universities

Phonon dispersion and lifetimes in MgB2

We measure phonon dispersion and linewidth in a single crystal of MgB_2 along the Gamma-A, Gamma-M and A-L directions using inelastic X-Ray scattering. We use Density Functional Theory to compute the effect of both electron-phonon coupling and anharmonicity on the linewidth, obtaining excellent agreement with experiment. Anomalous broadening of the E_2g phonon mode is found all along Gamma-A. The dominant contribution to the linewidth is always the electron-phonon coupling.Comment: 4 pages, 3 figure