A geometric basis for the standard-model gauge group

A geometric approach to the standard model in terms of the Clifford algebra Cl_7 is advanced. A key feature of the model is its use of an algebraic spinor for one generation of leptons and quarks. Spinor transformations separate into left-sided ("exterior") and right-sided ("interior") types. By definition, Poincare transformations are exterior ones. We consider all rotations in the seven-dimensional space that (1) conserve the spacetime components of the particle and antiparticle currents and (2) do not couple the right-chiral neutrino. These rotations comprise additional exterior transformations that commute with the Poincare group and form the group SU(2)_L, interior ones that constitute SU(3)_C, and a unique group of coupled double-sided rotations with U(1)_Y symmetry. The spinor mediates a physical coupling of Poincare and isotopic symmetries within the restrictions of the Coleman--Mandula theorem. The four extra spacelike dimensions in the model form a basis for the Higgs isodoublet field, whose symmetry requires the chirality of SU(2). The charge assignments of both the fundamental fermions and the Higgs boson are produced exactly.Comment: 17 pages, LaTeX requires iopart. Accepted for publication in J. Phys. A: Math. Gen. 9 Mar 2001. Typos correcte

A Direct Interaction between IP3 Receptors and Myosin II Regulates IP3 Signaling in C. elegans

AbstractMolecular and physiological studies of cells implicate interactions between the cytoskeleton and the intracellular calcium signalling machinery as an important mechanism for the regulation of calcium signalling [1–11]. However, little is known about the functions of such mechanisms in animals. A key component of the calcium signalling network is the intracellular release of calcium in response to the production of the second messenger inositol 1,4,5-trisphosphate (IP3), mediated by the IP3 receptor (IP3R) [12–14]. We show that C. elegans IP3Rs, encoded by the gene itr-1, interact directly with myosin II. The interactions between two myosin proteins, UNC-54 and MYO-1, and ITR-1 were identified in a yeast two-hybrid screen and subsequently confirmed in vivo and in vitro. We defined the interaction sites on both the IP3R and MYO-1. To test the effect of disrupting the interaction in vivo we overexpressed interacting fragments of both proteins in C. elegans. This decreased the animal's ability to upregulate pharyngeal pumping in response to food. This is a known IP3-mediated process [15]. Other IP3-mediated processes, e.g., defecation [16], were unaffected. Thus it appears that interactions between IP3Rs and myosin are required for maintaining the specificity of IP3 signalling in C. elegans and probably more generally

The H-Index as a Quantitative Indicator of the Relative Impact of Human Diseases

Assessment of the relative impact of diseases and pathogens is important for agencies and other organizations charged with providing disease surveillance, management and control. It also helps funders of disease-related research to identify the most important areas for investment. Decisions as to which pathogens or diseases to target are often made using complex risk assessment approaches; however, these usually involve evaluating a large number of hazards as it is rarely feasible to conduct an in-depth appraisal of each. Here we propose the use of the H-index (or Hirsch index) as an alternative rapid, repeatable and objective means of assessing pathogen impact. H-index scores for 1,414 human pathogens were obtained from the Institute for Scientific Information's Web of Science (WOS) in July/August 2010. Scores were compared for zoonotic/non-zoonotic, and emerging/non-emerging pathogens, and across taxonomic groups. H-indices for a subset of pathogens were compared with Disability Adjusted Life Year (DALY) estimates for the diseases they cause. H-indices ranged from 0 to 456, with a median of 11. Emerging pathogens had higher H-indices than non-emerging pathogens. Zoonotic pathogens tended to have higher H-indices than human-only pathogens, although the opposite was observed for viruses. There was a significant correlation between the DALY of a disease and the H-index of the pathogen(s) that cause it. Therefore, scientific interest, as measured by the H-index, appears to be a reflection of the true impact of pathogens. The H-index method can be utilized to set up an objective, repeatable and readily automated system for assessing pathogen or disease impact

Infectious bronchitis vaccine virus detection and part-S1 genetic variation following single or dual inoculation in broiler chicks.

An investigation was undertaken of the extent of genetic variation occurring within infectious bronchitis virus (IBV) vaccine strains following vaccination of day-old broiler chicks. Chicks were divided into seven groups, with two groups receiving single Massachusetts (Mass) vaccinations while the other four were inoculated with combinations of different IBV serotypes; Mass, 793B, D274 and Arkansas (Ark). The remaining group was maintained as an unvaccinated control. Following vaccination, swabs and tissues collected at intervals were pooled and RNA was extracted for detection of IBV by reverse transcription polymerase chain reaction. Positive amplicons were sequenced for the part-S1 gene and compared to the original vaccine strain sequences. Single nucleotide polymorphisms, amino acid variations and hydrophobicity changes were identified and recorded for each sampling point. A total of 106 single nucleotide polymorphisms were detected within 28 isolates. The average single nucleotide polymorphism counts of swab isolates were greater than those found in tissue samples. This translated into 64 amino acid changes; however only six resulted in a change to the hydrophobicity properties. All hydrophobic alterations occurred within swab isolates and the majority were recovered at 3 days post vaccination suggesting such changes to be detrimental to early virus survival. Nucleotide deletions were seen only in the group given the combination of Mass and Ark. Of the 16 sequenced samples in this group, 13 contained the same AAT deletion at position 1033 1035 in the Ark strains. Findings presented in this study demonstrate alteration in the S1 nucleotide sequence following co-administration of live IBV vaccines

Systematic Assessment of the Climate Sensitivity of Important Human and Domestic Animals Pathogens in Europe

Climate change is expected to threaten human health and well-being via its effects on climate-sensitive infectious diseases, potentially changing their spatial distributions, affecting annual/seasonal cycles, or altering disease incidence and severity. Climate sensitivity of pathogens is a key indicator that diseases might respond to climate change, but the proportion of pathogens that is climate-sensitive, and their characteristics, are not known. The climate sensitivity of European human and domestic animal infectious pathogens, and the characteristics associated with sensitivity, were assessed systematically in terms of selection of pathogens and choice of literature reviewed. Sixty-three percent (N = 157) of pathogens were climate sensitive; 82% to primary drivers such as rainfall and temperature. Protozoa and helminths, vector-borne, foodborne, soilborne and waterborne transmission routes were associated with larger numbers of climate drivers. Zoonotic pathogens were more climate sensitive than human- or animal-only pathogens. Thirty-seven percent of disability-adjusted-life-years arise from human infectious diseases that are sensitive to primary climate drivers. These results help prioritize surveillance for pathogens that may respond to climate change. Although this study identifies a high degree of climate sensitivity among important pathogens, their response to climate change will be dependent on the nature of their association with climate drivers and impacts of other drivers

How should we turn data into decisions in AgriFood?

The AgriFood supply chain is under significant pressures related to food security, climate change, and consumer demands for affordable and higher quality food. Various technologies are already deployed producing a large amount of data, which can be utilised to guide decision-making to improve productivity, reduce wastage, and increase traceability across the AgriFood supply chain. Several examples of the use of data are given, including improving efficiency in livestock production, supporting automation and use of robotics in crop production, increasing food safety and evidencing its provenance. The opportunities and ways forward were discussed at a workshop in November 2017, run by the Society of Chemical Industry and the Knowledge Transfer Network in the UK. This paper presents a summary of the key messages from the presentations and focus-group discussions during this event, as interpreted by the authors. A number of challenges in digitalisation of the AgriFood supply chain are discussed, such as low inter-operability of different data sets, silo mentality, low willingness to share data and a significant skills gap. Various approaches are presented that could help to unlock the benefits of using data, from practical support to producers and addressing skills gaps, to industrial leadership and the role of government departments and regulatory bodies in leading by example. Looking forward, data are already revolutionising the AgriFood supply chain, however, the benefits will remain piecemeal until the leaders of today are able to bring together the disparate groups into a cohesive whole

Lightlike infinity in GCA models of Spacetime

This paper discusses a 7 dimensional conformal geometric algebra model for spacetime based on the notion that spacelike and timelike infinities are distinct. I show how naturally of the dimensions represents the lightlike infinity and appears redundant in computations, yet usefull in interpretationComment: 12 page

Colony-specific foraging areas of lactating New Zealand fur seals

Copyright © 2008 Inter-Research.During 2005 and 2006, 21 lactating New Zealand fur seals Arctocephalus forsteri were tracked from 4 breeding colonies in southern Australia. The distance between colonies ranged between 46 and 207 km. In total, 101 foraging trips were recorded (2 to 19 trips ind.–1). Seals initiated foraging trips on a colony-specific bearing (Cape Gantheaume 141 ± 34°, Cape du Couedic 188 ± 12°, North Neptune Island 204 ± 12° and Liguanea Island 235 ± 19°). During autumn, seals from Cape du Couedic, North Neptune Island and Liguanea Island predominantly targeted distant oceanic waters associated with the subtropical front (STF), while seals from Cape Gantheaume targeted shelf waters associated with a seasonal coastal upwelling, the Bonney upwelling. The distance of each colony from the STF (based on the preferred colony bearing) or the Bonney upwelling in the case of Cape Gantheaume was correlated with the maximum straight-line distances travelled (Cape Gantheaume 119 ± 57 km, Cape du Couedic 433 ± 99 km, North Neptune Island 564 ± 97 km and Liguanea Island 792 ± 82 km). The organisation of colony-specific foraging grounds appears to be influenced by the proximity of colonies to predictable local upwelling features, as well as distant oceanic frontal zones. Knowledge of whether New Zealand fur seals utilise colony-specific foraging grounds may be important in predicting and identifying critical habitats and understanding whether management requirements are likely to vary between different colonies.Alastair Martin Mitri Baylis, Brad Page, Simon David Goldsworth

Spin Gauge Theory of Gravity in Clifford Space: A Realization of Kaluza-Klein Theory in 4-Dimensional Spacetime

A theory in which 4-dimensional spacetime is generalized to a larger space, namely a 16-dimensional Clifford space (C-space) is investigated. Curved Clifford space can provide a realization of Kaluza-Klein theory. A covariant Dirac equation in curved C-space is explored. The generalized Dirac field is assumed to be a polyvector-valued object (a Clifford number) which can be written as a superposition of four independent spinors, each spanning a different left ideal of Clifford algebra. The general transformations of a polyvector can act from the left and/or from the right, and form a large gauge group which may contain the group U(1)xSU(2)xSU(3) of the standard model. The generalized spin connection in C-space has the properties of Yang-Mills gauge fields. It contains the ordinary spin connection related to gravity (with torsion), and extra parts describing additional interactions, including those described by the antisymmetric Kalb-Ramond fields.Comment: 57 pages; References added, section 2 rewritten and expande

Human colon cancer cell lines show a diverse pattern of nitric oxide synthase gene expression and nitric oxide generation.

A panel of human colonic adenocarcinoma cell lines was examined both for expression of mRNAs of the nitric oxide synthase (NOS) gene family and for evidence of enzymic activity based on citrulline and nitrite (NO2-) formation. Reverse transcription-polymerase chain reaction (RT-PCR), revealed that all lines (SW480, SW620, DLD-1 and WiDr) expressed mRNA for the Ca(2+)-dependent endothelial (e)NOS, while SW480 cells also expressed the Ca(2+)-dependent neuronal (n)NOS. The mRNA for the Ca(2+)-independent inducible (i)NOS was expressed both by cytokine-stimulated and by unstimulated SW480, SW620 and DLD-1 cells, but none was seen at any time in the WiDr cells. There was, however, little correlation between mRNA expression and enzymic activity based on citrulline and NO2- formation. Thus none of the cell lines exhibited measurable Ca(2+)-dependent NOS activity, while Ca(2+)-independent NOS activity was seen in all but the WiDr cells. Furthermore, DLD-1 cells generated citrulline with resultant NO2- formation only after stimulation with lipopolysaccharide (LPS) and/or cytokines, while SW480 and SW620 did so constitutively. Thus RT-PCR studies indicate that tumour cells of similar epithelial origin display a diverse pattern of NOS gene family expression, and parallel biochemical studies clearly indicate that such expression does not always result in measurable enzymic activity leading to the generation of NO