Genetic markers for antioxidant capacity in a reef-building coral

© 2016 The Authors. The current lack of understanding of the genetic basis underlying environmental stress tolerance in reef-building corals impairs the development of new management approaches to confronting the global demise of coral reefs. On the Great Barrier Reef (GBR), an approximately 51% decline in coral cover occurred over the period 1985-2012. We conducted a gene-by-environment association analysis across 12 latitude on the GBR, as well as both in situ and laboratory genotype-by-phenotype association analyses. These analyses allowed us to identify alleles at two genetic loci that account for differences in environmental stress tolerance and antioxidant capacity in the common coral Acropora millepora. The effect size for antioxidant capacity was considerable and biologically relevant (32.5 and 14.6% for the two loci). Antioxidant capacity is a critical component of stress tolerance because a multitude of environmental stressors cause increased cellular levels of reactive oxygen species. Our findings provide the first step toward the development of novel coral reef management approaches, such as spatial mapping of stress tolerance for use in marine protected area design, identification of stress-tolerant colonies for assisted migration, and marker-assisted selective breeding to create more tolerant genotypes for restoration of denuded reefs

Unique walnut-shaped porous MnO<inf>2</inf>/C nanospheres with enhanced reaction kinetics for lithium storage with high capacity and superior rate capability

Unique walnut-shaped porous MnO2/carbon nanospheres via in situ carbonization of amorphous MnO2 nanospheres demonstrate enhanced reaction kinetics for lithium storage.This work is realized in the frame of a program for Changjiang Scholars and Innovative Research Team (IRT_15R52) of Chinese Ministry of Education. B. L. Su acknowledges the Chinese Central Government for an “Expert of the State” position in the Program of the “Thousand Talents” and a Life Membership at the Clare Hall, Cambridge and the financial support of the Department of Chemistry, University of Cambridge. Y. Li acknowledges Hubei Provincial Department of Education for the “Chutian Scholar” program. T. Hasan acknowledges funding from the Royal Academy of Engineering (Graphlex) and an Impact Acceleration Award (GRASS). This work is also financially supported by the National Science Foundation for Young Scholars of China (No. 21301133 and 51302204), International Science & Technology Cooperation Program of China (2015DFE52870) and and Self-determined and Innovative Research Funds of the SKLWUT (2015‐ZD‐7). The authors also would like to thank Dr. Bin-Jie Wang from Shanghai Nanoport (FEI, Shanghai) for TEM analysis, and thank Hang Ping from Wuhan University of Technology for the TGA/DSC tests.This is the author accepted manuscript. The final version is available from the Royal Society of Chemistry via http://dx.doi.org/10.1039/C6TA00594

Manganese dioxide nanosheet functionalized sulfur@PEDOT core-shell nanospheres for advanced lithium-sulfur batteries

MnO2 nanosheet functionalized S@PEDOT core–shell nanospheres demonstrate highly enhanced electrochemical performance for Li–S batteries, benefitting from effectively trapping polysulfides, minimizing polysulfide dissolution, and improving cathode conductivity and wettability.This is the accepted manuscript. The final version is available at http://pubs.rsc.org/en/content/articlelanding/2016/ta/c6ta03211g#!divAbstract

Runtime analysis of non-elitist populations: from classical optimisation to partial information

Although widely applied in optimisation, relatively little has been proven rigorously about the role and behaviour of populations in randomised search processes. This paper presents a new method to prove upper bounds on the expected optimisation time of population-based randomised search heuristics that use non-elitist selection mechanisms and unary variation operators. Our results follow from a detailed drift analysis of the population dynamics in these heuristics. This analysis shows that the optimisation time depends on the relationship between the strength of the selective pressure and the degree of variation introduced by the variation operator. Given limited variation, a surprisingly weak selective pressure suffices to optimise many functions in expected polynomial time. We derive upper bounds on the expected optimisation time of non-elitist Evolutionary Algorithms (EA) using various selection mechanisms, including fitness proportionate selection. We show that EAs using fitness proportionate selection can optimise standard benchmark functions in expected polynomial time given a sufficiently low mutation rate. As a second contribution, we consider an optimisation scenario with partial information, where fitness values of solutions are only partially available. We prove that non-elitist EAs under a set of specific conditions can optimise benchmark functions in expected polynomial time, even when vanishingly little information about the fitness values of individual solutions or populations is available. To our knowledge, this is the first runtime analysis of randomised search heuristics under partial information

Hierarchical Equations of Motion Approach to Quantum Thermodynamics

We present a theoretical framework to investigate quantum thermodynamic processes under non-Markovian system-bath interactions on the basis of the hierarchical equations of motion (HEOM) approach, which is convenient to carry out numerically "exact" calculations. This formalism is valuable because it can be used to treat not only strong system-bath coupling but also system-bath correlation or entanglement, which will be essential to characterize the heat transport between the system and quantum heat baths. Using this formalism, we demonstrated an importance of the thermodynamic effect from the tri-partite correlations (TPC) for a two-level heat transfer model and a three-level autonomous heat engine model under the conditions that the conventional quantum master equation approaches are failed. Our numerical calculations show that TPC contributions, which distinguish the heat current from the energy current, have to be take into account to satisfy the thermodynamic laws.Comment: 9 pages, 4 figures. As a chapter of: F. Binder, L. A. Correa, C. Gogolin, J. Anders, and G. Adesso (eds.), "Thermodynamics in the quantum regime - Recent Progress and Outlook", (Springer International Publishing

Ptch2/Gas1 and Ptch1/Boc differentially regulate Hedgehog signalling in murine primordial germ cell migration.

Gas1 and Boc/Cdon act as co-receptors in the vertebrate Hedgehog signalling pathway, but the nature of their interaction with the primary Ptch1/2 receptors remains unclear. Here we demonstrate, using primordial germ cell migration in mouse as a developmental model, that specific hetero-complexes of Ptch2/Gas1 and Ptch1/Boc mediate the process of Smo de-repression with different kinetics, through distinct modes of Hedgehog ligand reception. Moreover, Ptch2-mediated Hedgehog signalling induces the phosphorylation of Creb and Src proteins in parallel to Gli induction, identifying a previously unknown Ptch2-specific signal pathway. We propose that although Ptch1 and Ptch2 functionally overlap in the sequestration of Smo, the spatiotemporal expression of Boc and Gas1 may determine the outcome of Hedgehog signalling through compartmentalisation and modulation of Smo-downstream signalling. Our study identifies the existence of a divergent Hedgehog signal pathway mediated by Ptch2 and provides a mechanism for differential interpretation of Hedgehog signalling in the germ cell niche

Anchoring ultrafine metallic and oxidized Pt nanoclusters on yolk-shell TiO2 for unprecedentedly high photocatalytic hydrogen production

We demonstrate an alkali modification process to produce highly dispersed ultrafine Pt nanoclusters with metallic Pt$^0$ and oxidized Pt$^{2+}$ species as co-catalyst anchored on nanosheet-constructed yolk-shell TiO$_2$ (NYTiO$_2$-Pt) acting as light harvesting reactor for highly efficient photocatalytic H$_2$ production. Benefiting from the high surface area, highly dispersed ultrafine Pt nanoclusters (~0.6 nm) with Pt$^0$ and Pt$^{2+}$ species and special nanosheet-constructed yolk-shell structure, this novel light harvesting reactor exhibits excellent performance for photocatalytic H$_2$ production. The NYTiO$_2$-Pt-0.5 (0.188 wt% Pt) demonstrates an unprecedentedly high H$_2$ evolution rate of 20.88 mmol h$^{−1}$ g$^{−1}$ with excellent photocatalytic stability, which is 87 times than that of NYTiO$_2$-Pt-3.0 (0.24 mmol h$^{−1}$ g$^{−1}$, 1.88 wt% Pt), and also much higher than those of other TiO$_2$ nanostructures with the same Pt content. Such H$_2$ evolution rate is the highest reported for photocatalytic H$_2$ production with such a low Pt content under simulated solar light. Our strategy here suggests that via alkali modifying the photocatalysts, we can not only enhance the H$_2$ production for solar energy conversion but also significantly decrease the noble metal content for cost saving.B. L. Su acknowledges the Chinese Central Government for an “Expert of the State” position in the Program of the “Thousand Talents” and a Life Membership at the Clare Hall, Cambridge and the financial support of the Department of Chemistry, University of Cambridge. Y. Li acknowledges Hubei Provincial Department of Education for the “Chutian Scholar” program. T. H. acknowledges support from the Royal Academy of Engineering through a Research Fellowship and an EPSRC Impact acceleration grant. This work is supported by the National Key Research and Development Program of China (2016YFA0202602), Program for Changjiang Scholars and Innovative Research Team in University (IRT_15R52), International Science & Technology Cooperation Program of China (2015DFE52870), National Natural Science Foundation of China (51302204 and 51502225) and the Fundamental Research Funds for the Central Universities (WUT: 2016 029)

Accelerating Haplotype-Based Genome-Wide Association Study Using Perfect Phylogeny and Phase-Known Reference Data

The genome-wide association study (GWAS) has become a routine approach for mapping disease risk loci with the advent of large-scale genotyping technologies. Multi-allelic haplotype markers can provide superior power compared with single-SNP markers in mapping disease loci. However, the application of haplotype-based analysis to GWAS is usually bottlenecked by prohibitive time cost for haplotype inference, also known as phasing. In this study, we developed an efficient approach to haplotype-based analysis in GWAS. By using a reference panel, our method accelerated the phasing process and reduced the potential bias generated by unrealistic assumptions in phasing process. The haplotype-based approach delivers great power and no type I error inflation for association studies. With only a medium-size reference panel, phasing error in our method is comparable to the genotyping error afforded by commercial genotyping solutions

Magnitude and Complexity of Rectal Mucosa HIV-1-Specific CD8+ T-Cell Responses during Chronic Infection Reflect Clinical Status

The intestinal mucosa displays robust virus replication and pronounced CD4+ T-cell loss during acute human immunodeficiency virus type 1 (HIV-1) infection. The ability of HIV-specific CD8+ T-cells to modulate disease course has prompted intensive study, yet the significance of virus-specific CD8+ T-cells in mucosal sites remains unclear.We evaluated five distinct effector functions of HIVgag-specific CD8+ T-cells in rectal mucosa and blood, individually and in combination, in relationship to clinical status and antiretroviral therapy (ART). In subjects not on ART, the percentage of rectal Gag-specific CD8+ T-cells capable of 3, 4 or 5 simultaneous effector functions was significantly related to blood CD4 count and inversely related to plasma viral load (PVL) (p<0.05). Polyfunctional rectal CD8+ T-cells expressed higher levels of MIP-1beta and CD107a on a per cell basis than mono- or bifunctional cells. The production of TNFalpha, IFN-gamma, and CD107a by Gag-specific rectal CD8+ T-cells each correlated inversely (p<0.05) with PVL, and MIP-1beta expression revealed a similar trend. CD107a and IFN-gamma production were positively related to blood CD4 count (p<0.05), with MIP-1beta showing a similar trend. IL-2 production by rectal CD8+ T-cells was highly variable and generally low, and showed no relationship to viral load or blood CD4 count.The polyfunctionality of rectal Gag-specific CD8+ T-cells appears to be related to blood CD4 count and inversely related to PVL. The extent to which these associations reflect causality remains to be determined; nevertheless, our data suggest a potentially important role for mucosal T-cells in limiting virus replication during chronic infection