Length control of microtubules by depolymerizing motor proteins

In many intracellular processes, the length distribution of microtubules is controlled by depolymerizing motor proteins. Experiments have shown that, following non-specific binding to the surface of a microtubule, depolymerizers are transported to the microtubule tip(s) by diffusion or directed walk and, then, depolymerize the microtubule from the tip(s) after accumulating there. We develop a quantitative model to study the depolymerizing action of such a generic motor protein, and its possible effects on the length distribution of microtubules. We show that, when the motor protein concentration in solution exceeds a critical value, a steady state is reached where the length distribution is, in general, non-monotonic with a single peak. However, for highly processive motors and large motor densities, this distribution effectively becomes an exponential decay. Our findings suggest that such motor proteins may be selectively used by the cell to ensure precise control of MT lengths. The model is also used to analyze experimental observations of motor-induced depolymerization.Comment: Added section with figures and significantly expanded text, current version to appear in Europhys. Let

End wall flows in rotors and stators of a single stage compressor

A computer code for solving the parabolized Navier-Stokes equations for internal flows was developed. Oscillations that develop in the calculation procedure are discussed. The measurements made in the hub and annulus wall boundary layers are summarized. The flow in the hub wall boundary layer, starting ahead of the inlet guide vanes to the inlet of the rotor is traced

On the evidence of deterministic chaos in ECG: surrogate and predictability analysis

The question whether the human cardiac system is chaotic or not has been an open one. Recent results in chaos theory have shown that the usual methods, such as saturation of correlation dimension D2 or the existence of positive Lyapunov exponent, alone do not provide sufficient evidence to confirm the presence of deterministic chaos in an experimental system. The results of surrogate data analysis together with the short-term prediction analysis can be used to check whether a given time series is consistent with the hypothesis of deterministic chaos. In this work nonlinear dynamical tools such as surrogate data analysis, short-term prediction, saturation of D2 and positive Lyapunov exponent have been applied to measured ECG data for several normal and pathological cases. The pathology presently studied are PVC (Premature Ventricular Contraction), VTA (Ventricular Tachy Arrhythmia), AV (Atrio-Ventricular) block and VF (Ventricular Fibrillation). While these results do not prove that ECG time series is definitely chaotic, they are found to be consistent with the hypothesis of chaotic dynamics

Two Dimensional Quantum Mechanical Modeling of Nanotransistors

Quantization in the inversion layer and phase coherent transport are anticipated to have significant impact on device performance in 'ballistic' nanoscale transistors. While the role of some quantum effects have been analyzed qualitatively using simple one dimensional ballistic models, two dimensional (2D) quantum mechanical simulation is important for quantitative results. In this paper, we present a framework for 2D quantum mechanical simulation of a nanotransistor / Metal Oxide Field Effect Transistor (MOSFET). This framework consists of the non equilibrium Green's function equations solved self-consistently with Poisson's equation. Solution of this set of equations is computationally intensive. An efficient algorithm to calculate the quantum mechanical 2D electron density has been developed. The method presented is comprehensive in that treatment includes the three open boundary conditions, where the narrow channel region opens into physically broad source, drain and gate regions. Results are presented for (i) drain current versus drain and gate voltages, (ii) comparison to results from Medici, and (iii) gate tunneling current, using 2D potential profiles. Methods to reduce the gate leakage current are also discussed based on simulation results.Comment: 12 figures. Journal of Applied Physics (to appear

Transmission Through Carbon Nanotubes With Polyhedral Caps

We study electron transport between capped carbon nanotubes and a substrate, and relate the transmission probability to the local density of states in the cap. Our results show that the transmission probability mimics the behavior of the density of states at all energies except those that correspond to localized states in the cap. Close proximity of a substrate causes hybridization of the localized state. As a result, new transmission paths open from the substrate to nanotube continuum states via the localized states in the cap. Interference between various transmission paths gives rise to antiresonances in the transmission probability, with the minimum transmission equal to zero at energies of the localized states. Defects in the nanotube that are placed close to the cap cause resonances in the transmission probability, instead of antiresonances, near the localized energy levels. Depending on the spatial position of defects, these resonant states are capable of carrying a large current. These results are relevant to carbon nanotube based studies of molecular electronics and probe tip applications

Understanding edge-connectivity in the Internet through core-decomposition

Internet is a complex network composed by several networks: the Autonomous Systems, each one designed to transport information efficiently. Routing protocols aim to find paths between nodes whenever it is possible (i.e., the network is not partitioned), or to find paths verifying specific constraints (e.g., a certain QoS is required). As connectivity is a measure related to both of them (partitions and selected paths) this work provides a formal lower bound to it based on core-decomposition, under certain conditions, and low complexity algorithms to find it. We apply them to analyze maps obtained from the prominent Internet mapping projects, using the LaNet-vi open-source software for its visualization