1,030 research outputs found
Graph run-length matrices for histopathological image segmentation
Cataloged from PDF version of article.The histopathological examination of tissue specimens is essential for cancer diagnosis and grading. However, this examination is subject to a considerable amount of observer variability as it mainly relies on visual interpretation of pathologists. To alleviate this problem, it is very important to develop computational quantitative tools, for which image segmentation constitutes the core step. In this paper, we introduce an effective and robust algorithm for the segmentation of histopathological tissue images. This algorithm incorporates the background knowledge of the tissue organization into segmentation. For this purpose, it quantifies spatial relations of cytological tissue components by constructing a graph and uses this graph to define new texture features for image segmentation. This new texture definition makes use of the idea of gray-level run-length matrices. However, it considers the runs of cytological components on a graph to form a matrix, instead of considering the runs of pixel intensities. Working with colon tissue images, our experiments demonstrate that the texture features extracted from "graph run-length matrices" lead to high segmentation accuracies, also providing a reasonable number of segmented regions. Compared with four other segmentation algorithms, the results show that the proposed algorithm is more effective in histopathological image segmentatio
Value creation by Turkish enterprises
This study focuses on the resurgence of the automotive and appliance sectors in Turkey’s recent years. The analysis of both these sectors reveals some interesting lessons about technology management and investment strategies for companies to invest in Turkey. We discuss the major changes and project the future in both industries. Turkey seems to be a clear winner though there are some factors that could reverse the trend. The research is a joint field study partne rship between Carnegie Mellon and Sabanci Universities
Over-the-air ensemble inference with model privacy
We consider distributed inference at the wireless edge, where multiple clients with an ensemble of models, each trained independently on a local dataset, are queried in parallel to make an accurate decision on a new sample. In addition to maximizing inference accuracy, we also want to maximize the privacy of local models. We exploit the superposition property of the air to implement bandwidth-efficient ensemble inference methods. We introduce different over-the-air ensemble methods and show that these schemes perform significantly better than their orthogonal counterparts, while using less resources and providing privacy guarantees. We also provide experimental results verifying the benefits of the proposed over-the-air inference approach, whose source code is shared publicly on Github
On lossy transmission of correlated sources over a multiple access channel
We study lossy communication of correlated sources over a multiple access channel. In particular, we provide a joint source-channel coding scheme for transmitting correlated sources with decoder side information, and study the conditions under which separate source and channel coding is optimal. For the latter, the encoders and/or the decoder have access to a common observation conditioned on which the two sources are independent. By establishing necessary and sufficient conditions, we show the optimality of separation when the encoders and the decoder both have access to the common observation. We also demonstrate that separation is optimal when only the encoders have access to the common observation whose lossless recovery is required at the decoder. As a special case, we study separation for sources with a common part. Our results indicate that side information can have significant impact on the optimality of source-channel separation in lossy transmission
Over-the-air ensemble inference with model privacy
We consider distributed inference at the wireless edge, where multiple clients with an ensemble of models, each trained independently on a local dataset, are queried in parallel to make an accurate decision on a new sample. In addition to maximizing inference accuracy, we also want to maximize the privacy of local models. We exploit the superposition property of the air to implement bandwidth-efficient ensemble inference methods. We introduce different over-the-air ensemble methods and show that these schemes perform significantly better than their orthogonal counterparts, while using less resources and providing privacy guarantees. We also provide experimental results verifying the benefits of the proposed over-the-air inference approach, whose source code is shared publicly on Github
Bivariate polynomial coding for efficient distributed matrix multiplication
Coded computing is an effective technique to mitigate “stragglers” in large-scale and distributed matrix multiplication. In particular, univariate polynomial codes have been shown to be effective in straggler mitigation by making the computation time depend only on the fastest workers. However, these schemes completely ignore the work done by the straggling workers resulting in a waste of computational resources. To reduce the amount of work left unfinished at workers, one can further decompose the matrix multiplication task into smaller sub-tasks, and assign multiple sub-tasks to each worker, possibly heterogeneously, to better fit their particular storage and computation capacities. In this work, we propose a novel family of bivariate polynomial codes to efficiently exploit the work carried out by straggling workers. We show that bivariate polynomial codes bring significant advantages in terms of upload communication costs and storage efficiency, measured in terms of the number of sub-tasks that can be computed per worker. We propose two bivariate polynomial coding schemes. The first one exploits the fact that bivariate interpolation is always possible on a rectangular grid of evaluation points. We obtain such points at the cost of adding some redundant computations. For the second scheme, we relax the decoding constraints and require decodability for almost all choices of the evaluation points. We present interpolation sets satisfying such decodability conditions for certain storage configurations of workers. Our numerical results show that bivariate polynomial coding considerably reduces the average computation time of distributed matrix multiplication. We believe this work opens up a new class of previously unexplored coding schemes for efficient coded distributed computation
Sparse random networks for communication-efficient federated learning
One main challenge in federated learning is the large communication cost of ex-changing weight updates from clients to the server at each round. While prior work has made great progress in compressing the weight updates through gradient compression methods, we propose a radically different approach that does not update the weights at all. Instead, our method freezes the weights at their initial random values and learns how to sparsify the random network for the best performance. To this end, the clients collaborate in training a stochastic binary mask to find the optimal sparse random network within the original one. At the end of the training, the final model is a sparse network with random weights – or a sub-network inside the dense random network. We show improvements in accuracy, communication (less than 1 bit per parameter (bpp)), convergence speed, and final model size (less than 1 bpp) over relevant baselines on MNIST, EMNIST, CIFAR- 10, and CIFAR-100 datasets, in the low bitrate regime
DeepJSCC-Q: Channel Input Constrained Deep Joint Source-Channel Coding
Recent works have shown that the task of wireless transmission of images can be learned with the use of machine learning techniques. Very promising results in end-to-end image quality, superior to popular digital schemes that utilize source and channel coding separation, have been demonstrated through the training of an autoencoder, with a non-trainable channel layer in the middle. However, these methods assume that any complex value can be transmitted over the channel, which can prevent the application of the algorithm in scenarios where the hardware or protocol can only admit certain sets of channel inputs, such as the use of a digital constellation. Herein, we propose DeepJSCC-Q, an end-to-end optimized joint source-channel coding scheme for wireless image transmission, which is able to operate with a fixed channel input alphabet. We show that DeepJSCC-Q can achieve similar performance to models that use continuous-valued channel input. Importantly, it preserves the graceful degradation of image quality observed in prior work when channel conditions worsen, making DeepJSCC-Q much more attractive for deployment in practical systems
A new method for fabrication of nanohydroxyapatite and TCP from the sea snail Cerithium vulgatum
Biphasic bioceramic nanopowders of hydroxyapatite (HA) and β-tricalcium phosphate (TCP) were prepared from shells of the sea snail Cerithium vulgatum (Bruguière, 1792) using a novel chemical method. Calcination of the powders produced was carried out at varying temperatures, specifically at 400°C and 800°C, in air for 4 hours. When compared to the conventional hydrothermal transformation method, this chemical method is very simple, economic, due to the fact that it needs inexpensive and safe equipment, because the transformation of the aragonite and calcite of the shells into the calcium phosphate phases takes place at 80°C under the atmospheric pressure. The powders produced were determined using infrared spectroscopy (FT-IR), X-ray diffraction, and scanning electron microscopy (SEM). The features of the powders produced along with the fact of their biological origin qualify these powders for further consideration and experimentation to fabricate nanoceramic biomaterials. © 2014 O. Gunduz et al
Semi-automatic segmentation of subcutaneous tumours from micro-computed tomography images
Cataloged from PDF version of article.This paper outlines the first attempt to segment the boundary of preclinical subcutaneous tumours, which are frequently used in cancer research, from micro-computed tomography (microCT) image data. MicroCT images provide low tissue contrast, and the tumour-to-muscle interface is hard to determine, however faint features exist which enable the boundary to be located. These are used as the basis of our semi-automatic segmentation algorithm. Local phase feature detection is used to highlight the faint boundary features, and a level set-based active contour is used to generate smooth contours that fit the sparse boundary features. The algorithm is validated against manually drawn contours and micro-positron emission tomography (microPET) images. When compared against manual expert segmentations, it was consistently able to segment at least 70% of the tumour region (n = 39) in both easy and difficult cases, and over a broad range of tumour volumes. When compared against tumour microPET data, it was able to capture over 80% of the functional microPET volume. Based on these results, we demonstrate the feasibility of subcutaneous tumour segmentation from microCT image data without the assistance of exogenous contrast agents. Our approach is a proof-of-concept that can be used as the foundation for further research, and to facilitate this, the code is open-source and available from www.setuvo.com. © 2013 Institute of Physics and Engineering in Medicine
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