Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots

In nature, roots of healthy plants are colonized by multikingdom microbial communities that include bacteria, fungi, and oomycetes. A key question is how plants control the assembly of these diverse microbes in roots to maintain host–microbe homeostasis and health. Using microbiota reconstitution experiments with a set of immunocompromised Arabidopsis thaliana mutants and a multikingdom synthetic microbial community (SynCom) representative of the natural A. thaliana root microbiota, we observed that microbiota-mediated plant growth promotion was abolished in most of the tested immunocompromised mutants. Notably, more than 40% of between-genotype variation in these microbiota-induced growth differences was explained by fungal but not bacterial or oomycete load in roots. Extensive fungal overgrowth in roots and altered plant growth was evident at both vegetative and reproductive stages for a mutant impaired in the production of tryptophan-derived, specialized metabolites (cyp79b2/b3). Microbiota manipulation experiments with single- and multikingdom microbial SynComs further demonstrated that 1) the presence of fungi in the multikingdom SynCom was the direct cause of the dysbiotic phenotype in the cyp79b2/b3 mutant and 2) bacterial commensals and host tryptophan metabolism are both necessary to control fungal load, thereby promoting A. thaliana growth and survival. Our results indicate that protective activities of bacterial root commensals are as critical as the host tryptophan metabolic pathway in preventing fungal dysbiosis in the A. thaliana root endosphere

Aliens in Antarctica: Accessing transfer of plant propagules by human visitors to reduce invasion risk

Despite considerable research on biological invasions, key areas remain poorly explored, especially ways to reduce unintentional propagule transfer. The Antarctic represents a microcosm of the situation, with the numbers of established non-native species growing. Information to help reduce potential impacts is therefore critical. We measured the propagule load of seeds, and fragments of bryophytes and lichens (the number of other plant or animal fragments was too low to draw any conclusions) carried in the clothing and gear of visitors to the Antarctic, during the 2007/08 austral summer. Samples were collected from different categories of visitors associated with national research programs and tourism and different categories of clothing and gear, new as well as used. We also collected information about the timing of travel and the regions visitors had travelled to prior to Antarctic travel. Seeds were found in 20% and 45% of tourist and science visitor samples, respectively. For bryophyte and lichen fragments the proportions were 11% and 20%, respectively. Footwear, trousers and bags belonging to field scientists were the highest risk items, especially of those personnel which had previously visited protected areas, parklands/botanic gardens or alpine areas. Tourists who visited rural/agricultural areas prior to travel, and/or travel with national programs or on smaller tourist vessels had the highest probability of transferring plant propagules. Travel either during the boreal or austral autumn months increased the probability of propagule presence. Our assessment is applicable to other areas given evidence of propagule transfer patterns in those areas that are broadly similar to those documented here. The current work provides a sound evidence base for both self-regulation (e.g. taking care of personal equipment) and organization-based regulation (e.g. issuing guidelines and holding regular inspections) to reduce propagule transfer of plants to the Antarctic

A Public Survey on Handling Male Chicks in the Dutch Egg Sector

In 2035 global egg demand will have risen 50% from 1985. Because we are not able to tell in the egg whether it will become a male or female chick, billons of one day-old male chicks will be killed. International research initiatives are underway in this area, and governments encourage the development of an alternative with the goal of eliminating the culling of day-old male chicks. The Netherlands holds an exceptional position in the European egg trade, but is also the only country in the European Union where the downside of the egg sector, the practice of killing day-old male chicks, is a recurrent subject of societal debate. ‘Preventing the killing of young animals’ and ‘in ovo sex determination’ are the two alternative approaches available to solve this problem. It is clear that both approaches solve the problem of killing day-old male chicks, either by keeping them alive or by preventing them from living, but they also raise a lot of new animal welfare-related dilemmas. A thorough analysis was undertaken of these dilemmas and the results are presented in this article. The analysis resulted in an ethical framework based on the two main approaches in bioethics: a consequentialist approach and a deontological approach. This ethical framework was used to develop an online survey administered to ascertain Dutch public opinion about these alternative approaches. The results show that neither alternative will be fully accepted, or accepted by more than half of Dutch society. However, the survey does provide an insight into the motives that are important for people’s choice: food safety and a good treatment of animals. Irrespective of the approach chosen, these values should be safeguarded and communicated clearly

A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from <i>Typha latifolia</i>, <i>Typha angustifolia</i>, and <i>Azolla filiculoides</i>

Rewetting drained peatlands for paludiculture purposes is a way to reduce peat oxidation (and thus CO2 emissions) while at the same time it could generate an income for landowners, who need to convert their traditional farming into wetland farming. The side effect of rewetting drained peatlands is that it potentially induces high methane (CH4) emissions. Topsoil removal could reduce this emission due to the removal of easily degradable carbon and nutrients. Another way to limit CH4 emissions is the choice in paludiculture species. In this study we conducted a field experiment in the coastal area of the Netherlands, in which a former non-intensively used drained peat grassland is rewetted to complete inundation (water table ∼ +18 cm) after a topsoil removal of ∼ 20 cm. Two emergent macrophytes with high potential of internal gas transport (Typha latifolia and Typha angustifolia), and a free floating macrophyte (Azolla filiculoides), were introduced and intensive measurement campaigns were conducted to capture CO2 and CH4 fluxes as well as soil and surface water chemistry. Greenhouse gas fluxes were compared with a high-productive peat meadow as a reference site. Topsoil removal reduced the amount of phosphorus and iron in the soil to a large extent. The total amount of soil carbon per volume stayed more or less the same. The salinity of the soil was in general high, defining the system as brackish. Despite the topsoil removal and salinity, we found very high CH4 emissions for T. latifolia (84.8 g CH4 m−2 yr−1) compared with the much lower emissions from T. angustifolia (36.9 g CH4 m−2 yr−1) and Azolla (22.3 g CH4 m−2 yr−1). The high emissions can be partly explained by the large input of dissolved organic carbon into the system, but it could also be caused by plant stress factors like salinity level and herbivory. For the total CO2 flux (including C-export), the rewetting was effective, with a minor uptake of CO2 for Azolla (−0.13 kg CO2 m−2 yr−1) and a larger uptake for the Typha species (−1.14 and −1.26 kg CO2 m−2 yr−1 for T. angustifolia and T. latifolia, respectively) compared with the emission of 2.06 kg CO2 m−2 yr−1 for the reference site. T. angustifolia and Azolla, followed by T. latifolia, seem to have the highest potential for reducing greenhouse gas emissions after rewetting to flooded conditions (−1.4, 2.9, and 10.5 t CO2 eq. ha−1 yr−1, respectively) compared with reference drained peatlands (20.6 t CO2 eq. ha−1 yr−1). When considering the total greenhouse gas balance, other factors, such as biomass use and storage of topsoil after removal, should be considered. Especially the latter factor could cause substantial carbon losses if not kept in anoxic conditions. When calculating the radiative forcing over time for the different paludicrops, which includes the GHG fluxes and the carbon release from the removed topsoil, T. latifolia will start to be beneficial in reducing global warming after 93 years compared with the reference site. For both Azolla and T. angustifolia this will be after 43 years.</p