A Mycobacterium smegmatis gyrase B specific monoclonal antibody reveals association of gyrase A and B subunits in the cell

DNA gyrase is a unique topoisomerase, which plays important roles in macromolecular events like DNA replication, transcription and genetic recombination. In this study a high affinity monoclonal antibody to the gyrase B (GyrB) subunit of Mycobacterium smegmatis was characterized, which did not cross-react with either the Escherichia coli GyrB subunit or with GyrB subunits from other mycobacterial species. The antibody recognized an epitope in the N-terminus, novobiocin-binding domain of GyrB. Immunoprecipitation of gyrase from M. smegmatis cell lysate revealed an association, mediated by ionic interactions, of gyrase A and GyrB subunits in the cell. This antibody is a valuable tool for structure-function analysis and immunocytological studies of mycobacterial DNA gyrase

Relativistic equation-of-motion coupled-cluster theory analysis of black-body radiation shift in the clock transition of Zn I

We have employed equation-of-motion coupled-cluster (EOM-CC) method in the four-component relativistic theory framework to understand roles of electron correlation effects in the $\textit{ab initio}$ estimations of electric dipole polarizabilities ($\alpha$) of the states engaged in the clock transition ($^{1}$S$_{0}$$\rightarrow$$^{3}$P$_{0}$) of the zinc atom. Roles of basis size, inclusion of higher-level excitations, and higher-order relativistic effects in the evaluation of both excitation energies of a few low-lying excited states and $\alpha$ are analyzed systematically. Our EOM-CC values are compared with the earlier reported theoretical and experimental results. This demonstrates the capability of the EOM-CC method to ascertain the preciseness of the black-body radiation shift in a clock transition, which holds paramount importance for optical clock-based experiments.Comment: 3 Figures, 11 page

Emergence of nanoscale inhomogeneity in the superconducting state of a homogeneously disordered conventional superconductor, NbN

The notion of spontaneous formation of an inhomogeneous superconducting state is at the heart of most theories attempting to understand the superconducting state in the presence of strong disorder. Using scanning tunneling spectroscopy and high resolution scanning transmission electron microscopy, we experimentally demonstrate that under the competing effects of strong homogeneous disorder and superconducting correlations, the superconducting state of a conventional superconductor, NbN, spontaneously segregates into domains. Tracking these domains as a function of temperature we observe that the superconducting domains persist across the bulk superconducting transition, Tc, and disappear close to the pseudogap temperature, T*, where signatures of superconducting correlations disappear from the tunneling spectrum and the superfluid response of the system

Robotic Remote Surveillance and Control through Speech Recognition

This paper deals with the remote based robotic surveillance system and control through speech processing. Robotic remote surveillance and control through speech recognition is a kind of simple Cyber Physical system. Cyber Physical system is connection between cyber world and physical world around us. Sensors in network map the physical parameters in digital, share the information with processors and CPS intelligently makes the decision after computing. Finally the decision command is translated into physical world by actuators. The speech commands from a user’s distant location are carried over wirelessly to a multifunctional robot unit. Robotic arm over a base will act for voice commands sent over media. Desired surveillance will be facilitated by movement of robot and installed surveillance unit. Video stream feed to user is sensing of physical environment while actions of arm represent the role of actuator. This system used in the heavy industry in any environment

Quasi-one-dimensional magnetism in the spin-1/2 antiferromagnet BaNa2 Cu (VO4)2

We report synthesis and magnetic properties of quasi-one-dimensional spin-12 Heisenberg antiferromagnetic chain compound BaNa2Cu(VO4)2. This orthovanadate has a centrosymmetric crystal structure, C2/c, where the magnetic Cu2+ ions form spin chains. These chains are arranged in layers, with the chain direction changing by 62∘ between the two successive layers. Alternatively, the spin lattice can be viewed as anisotropic triangular layers upon taking the interchain interactions into consideration. Despite this potential structural complexity, temperature-dependent magnetic susceptibility, heat capacity, electron spin resonance intensity, and nuclear magnetic resonance (NMR) shift agree well with the uniform spin-1/2 Heisenberg chain model with an intrachain coupling of J/kB≃5.6 K. The saturation field obtained from the magnetic isotherm measurement consistently reproduces the value of J/kB. Further, the 51V NMR spin-lattice relaxation rate mimics the one-dimensional character in the intermediate temperature range, whereas magnetic long-range order sets in below TN≃0.25 K. The effective interchain coupling is estimated to be J⊥/kB≃0.1 K. The theoretical estimation of exchange couplings using band-structure calculations reciprocate our experimental findings and unambiguously establish the one-dimensional character of the compound. Finally, the spin lattice of BaNa2Cu(VO4)2 is compared with the chemically similar but not isostructural compound BaAg2Cu(VO4)2

Rpb1 Sumoylation in Response to UV Radiation or Transcriptional Impairment in Yeast

Covalent modifications of proteins by ubiquitin and the Small Ubiquitin-like MOdifier (SUMO) have been revealed to be involved in a plethora of cellular processes, including transcription, DNA repair and DNA damage responses. It has been well known that in response to DNA damage that blocks transcription elongation, Rpb1, the largest subunit of RNA polymerase II (Pol II), is ubiquitylated and subsequently degraded in mammalian and yeast cells. However, it is still an enigma regarding how Pol II responds to damaged DNA and conveys signal(s) for DNA damage-related cellular processes. We found that Rpb1 is also sumoylated in yeast cells upon UV radiation or impairment of transcription elongation, and this modification is independent of DNA damage checkpoint activation. Ubc9, an E2 SUMO conjugase, and Siz1, an E3 SUMO ligase, play important roles in Rpb1 sumoylation. K1487, which is located in the acidic linker region between the C-terminal domain and the globular domain of Rpb1, is the major sumoylation site. Rpb1 sumoylation is not affected by its ubiquitylation, and vice versa, indicating that the two processes do not crosstalk. Abolishment of Rpb1 sumoylation at K1487 does not affect transcription elongation or transcription coupled repair (TCR) of UV-induced DNA damage. However, deficiency in TCR enhances UV-induced Rpb1 sumoylation, presumably due to the persistence of transcription-blocking DNA lesions in the transcribed strand of a gene. Remarkably, abolishment of Rpb1 sumoylation at K1487 causes enhanced and prolonged UV-induced phosphorylation of Rad53, especially in TCR-deficient cells, suggesting that the sumoylation plays a role in restraining the DNA damage checkpoint response caused by transcription-blocking lesions. Our results demonstrate a novel covalent modification of Rpb1 in response to UV induced DNA damage or transcriptional impairment, and unravel an important link between the modification and the DNA damage checkpoint response

Caffeine Prevents Transcription Inhibition and P-TEFb/7SK Dissociation Following UV-Induced DNA Damage

Background: The mechanisms by which DNA damage triggers suppression of transcription of a large number of genes are poorly understood. DNA damage rapidly induces a release of the positive transcription elongation factor b (P-TEFb) from the large inactive multisubunit 7SK snRNP complex. P-TEFb is required for transcription of most class II genes through stimulation of RNA polymerase II elongation and cotranscriptional pre-mRNA processing. Methodology/Principal Findings: We show here that caffeine prevents UV-induced dissociation of P-TEFb as well as transcription inhibition. The caffeine-effect does not involve PI3-kinase-related protein kinases, because inhibition of phosphatidylinositol 3-kinase family members (ATM, ATR and DNA-PK) neither prevents P-TEFb dissociation nor transcription inhibition. Finally, caffeine prevention of transcription inhibition is independent from DNA damage. Conclusion/Significance: Pharmacological prevention of P-TEFb/7SK snRNP dissociation and transcription inhibitio