Multiple Projection Optical Diffusion Tomography with Plane Wave Illumination

We describe a new data collection scheme for optical diffusion tomography in which plane wave illumination is combined with multiple projections in the slab imaging geometry. Multiple projection measurements are performed by rotating the slab around the sample. The advantage of the proposed method is that the measured data can be much more easily fitted into the dynamic range of most commonly used detectors. At the same time, multiple projections improve image quality by mutually interchanging the depth and transverse directions, and the scanned (detection) and integrated (illumination) surfaces. Inversion methods are derived for image reconstructions with extremely large data sets. Numerical simulations are performed for fixed and rotated slabs

A multi-wavelength analysis of active regions and sunspots by comparison of automatic detection algorithms

YesThe launch of the Solar Dynamics Observatory (SDO) in early 2010 has provided the solar physics community with the most detailed view of the Sun to date. However, this presents new challenges for the analysis of solar data. Currently, SDO sends over 1 terabyte of data per day back to Earth and methods for fast and reliable analysis are more important than ever. This article details four algorithms developed separately at the Universities of Bradford and Glasgow, the Royal Observatory of Belgium and Trinity College Dublin for the purposes of automated detection of solar active regions (ARs) and sunspots at different levels of the solar atmosphere

Communications and sensing of illumination contributions in a power led lighting system

Abstract — In recent years, LED technology emerged as a prime candidate for the future illumination light source, due to high energy efficiency and long life time. In addition, LEDs offer a superior flexibility in terms of colors and shapes, which leads to a potentially infinite variety of available light patterns. In order to create these patterns via easy user interaction, we need to sense the local light contribution of each LED. This measurement could be enabled through tagging of the light of each LED with unique embedded IDs. To this end, we propose a new modulation and multiple access scheme, named as codetime division multiple access- pulse position modulation (CTDMA-PPM): a form of PPM which is keyed according to a spreading sequence, and in which the duty cycle is subject to pulse width modulation (PWM) according to the required lighting setting. Our scheme considers illumination constraints in addition to the communication requirements and, to our best knowledge, it has not been addressed by other optical modulation methods. Based on the proposed modulation method and multiple access schemes, we develop a system structure, which includes illumination sources, a sensor receiver and a control system. Illumination sources illuminate the environment and transmit information, simultaneously. According to our theoretical analysis, this system structure could support a number of luminaries equal to the size of the CDMA codebook times the dimming range. I

Diffusion of particles moving with constant speed

The propagation of light in a scattering medium is described as the motion of a special kind of a Brownian particle on which the fluctuating forces act only perpendicular to its velocity. This enforces strictly and dynamically the constraint of constant speed of the photon in the medium. A Fokker-Planck equation is derived for the probability distribution in the phase space assuming the transverse fluctuating force to be a white noise. Analytic expressions for the moments of the displacement $$ along with an approximate expression for the marginal probability distribution function $P(x,t)$ are obtained. Exact numerical solutions for the phase space probability distribution for various geometries are presented. The results show that the velocity distribution randomizes in a time of about eight times the mean free time ($8t^*$) only after which the diffusion approximation becomes valid. This factor of eight is a well known experimental fact. A persistence exponent of $0.435 \pm 0.005$ is calculated for this process in two dimensions by studying the survival probability of the particle in a semi-infinite medium. The case of a stochastic amplifying medium is also discussed.Comment: 9 pages, 9 figures(Submitted to Phys. Rev. E

Biofunctionalized Patterned Polymer Brushes via Thiol-Ene Coupling for the Control of Cell Adhesion and the Formation of Cell Arrays

Thiol–ene radical coupling is increasingly used for the biofunctionalization of biomaterials. Thiol–ene chemistry presents interesting features that are particularly attractive for platforms requiring specific reactions with peptides or proteins and the patterning of cells, such as reactivity in physiological conditions and photoactivation. In this work, we synthesized alkene-functionalized (allyl and norbornene residues) antifouling polymer brushes (based on poly­(oligoethylene glycol methacrylate)) and studied thiol–ene coupling with a series of thiols including cell adhesive peptides RGD and REDV. The adhesion of umbilical vein endothelial cells (HUVECs) to these interfaces was studied and highlighted the absence of specific integrin engagement to REDV, in contrast to the high level of cell spreading observed on RGD-functionalized polymer brushes. This revealed that α₄β₁ integrins (binding to REDV sequences) are not sufficient on their own to sustain HUVEC spreading, in contrast to α_vβ₃ and α₅β₁ integrins. In addition, we photopatterned peptides at the surface of poly­(oligoethylene glycol methacrylate) (POEGMA) brushes and characterized the quality of the resulting arrays by epifluorescence microscopy and atomic force microscopy (AFM). This allowed the formation of cell patterns and demonstrated the potential of thiol–ene based photopatterning for the design of cell microarrays

A requirement for filopodia extension toward Slit during Robo-mediated axon repulsion

Axons navigate long distances through complex 3D environments to interconnect the nervous system during development. Although the precise spatiotemporal effects of most axon guidance cues remain poorly characterized, a prevailing model posits that attractive guidance cues stimulate actin polymerization in neuronal growth cones whereas repulsive cues induce actin disassembly. Contrary to this model, we find that the repulsive guidance cue Slit stimulates the formation and elongation of actin-based filopodia from mouse dorsal root ganglion growth cones. Surprisingly, filopodia form and elongate toward sources of Slit, a response that we find is required for subsequent axonal repulsion away from Slit. Mechanistically, Slit evokes changes in filopodium dynamics by increasing direct binding of its receptor, Robo, to members of the actin-regulatory Ena/VASP family. Perturbing filopodium dynamics pharmacologically or genetically disrupts Slit-mediated repulsion and produces severe axon guidance defects in vivo. Thus, Slit locally stimulates directional filopodial extension, a process that is required for subsequent axonal repulsion downstream of the Robo receptor.National Institutes of Health (U.S.) (Grant F32-CA165700)National Institutes of Health (U.S.) (Grant R01-GM068678)National Institutes of Health (U.S.) (Grant P30-CA014051

The inhibition of FGF receptor 1 activity mediates sorafenib-induced antiproliferative effects in human mesothelioma tumor-initiating cells

Tumor-initiating cells (TICs), the subset of cells within tumors endowed with stem-like features, being highly resistant to conventional cytotoxic drugs, are the major cause of tumor relapse. The identification of molecules able to target TICs remains a significant challenge in cancer therapy. Using TIC-enriched cultures (MM1, MM3 and MM4), from 3 human malignant pleural mesotheliomas (MPM), we tested the effects of sorafenib on cell survival and the intracellular mechanisms involved. Sorafenib inhibited cell-cycle progression in all the TIC cultures, but only in MM3 and MM4 cells this effect was associated with induction of apoptosis via the down-regulation of Mcl-1. Although sorafenib inhibits the activity of several tyrosine kinases, its effects are mainly ascribed to Raf inhibition. To investigate the mechanisms of sorafenib-mediated antiproliferative activity, TICs were treated with EGF or bFGF causing, in MM3 and MM4 cells, MEK, ERK1/2, Akt and STAT3 phosphorylation. These effects were significantly reduced by sorafenib in bFGF-treated cells, while a slight inhibition occurred after EGF stimulation, suggesting that sorafenib effects are mainly due to FGFR inhibition. Indeed, FGFR1 phosphorylation was inhibited by sorafenib. A different picture was observed in MM1 cells, which, releasing high levels of bFGF, showed an autocrine activation of FGFR1 and a constitutive phosphorylation/activation of MEK-ERK1/2. A powerful inhibitory response to sorafenib was observed in these cells, indirectly confirming the central role of sorafenib as FGFR inhibitor. These results suggest that bFGF signaling may impact antiproliferative response to sorafenib of MPM TICs, which is mainly mediated by a direct FGFR targeting

The Origin, Early Evolution and Predictability of Solar Eruptions

Coronal mass ejections (CMEs) were discovered in the early 1970s when space-borne coronagraphs revealed that eruptions of plasma are ejected from the Sun. Today, it is known that the Sun produces eruptive flares, filament eruptions, coronal mass ejections and failed eruptions; all thought to be due to a release of energy stored in the coronal magnetic field during its drastic reconfiguration. This review discusses the observations and physical mechanisms behind this eruptive activity, with a view to making an assessment of the current capability of forecasting these events for space weather risk and impact mitigation. Whilst a wealth of observations exist, and detailed models have been developed, there still exists a need to draw these approaches together. In particular more realistic models are encouraged in order to asses the full range of complexity of the solar atmosphere and the criteria for which an eruption is formed. From the observational side, a more detailed understanding of the role of photospheric flows and reconnection is needed in order to identify the evolutionary path that ultimately means a magnetic structure will erupt

A comparison of flare forecasting methods, I: results from the “All-clear” workshop

YesSolar flares produce radiation which can have an almost immediate effect on the near-Earth environ- ment, making it crucial to forecast flares in order to mitigate their negative effects. The number of published approaches to flare forecasting using photospheric magnetic field observations has prolifer- ated, with varying claims about how well each works. Because of the different analysis techniques and data sets used, it is essentially impossible to compare the results from the literature. This problem is exacerbated by the low event rates of large solar flares. The challenges of forecasting rare events have long been recognized in the meteorology community, but have yet to be fully acknowledged by the space weather community. During the interagency workshop on “all clear” forecasts held in Boulder, CO in 2009, the performance of a number of existing algorithms was compared on common data sets, specifically line-of-sight magnetic field and continuum intensity images from MDI, with consistent definitions of what constitutes an event. We demonstrate the importance of making such systematic comparisons, and of using standard verification statistics to determine what constitutes a good prediction scheme. When a comparison was made in this fashion, no one method clearly outperformed all others, which may in part be due to the strong correlations among the parameters used by different methods to characterize an active region. For M-class flares and above, the set of methods tends towards a weakly positive skill score (as measured with several distinct metrics), with no participating method proving substantially better than climatological forecasts.This work is the outcome of many collaborative and cooperative efforts. The 2009 “Forecasting the All-Clear” Workshop in Boulder, CO was sponsored by NASA/Johnson Space Flight Center’s Space Radiation Analysis Group, the National Center for Atmospheric Research, and the NOAA/Space Weather Prediction Center, with additional travel support for participating scientists from NASA LWS TRT NNH09CE72C to NWRA. The authors thank the participants of that workshop, in particular Drs. Neal Zapp, Dan Fry, Doug Biesecker, for the informative discussions during those three crazy days, and NCAR’s Susan Baltuch and NWRA’s Janet Biggs for organizational prowess. Workshop preparation and analysis support was provided for GB, KDL by NASA LWS TRT NNH09CE72C, and NASA Heliophysics GI NNH12CG10C. PAH and DSB received funding from the European Space Agency PRODEX Programme, while DSB and MKG also received funding from the European Union’s Horizon 2020 research and in- novation programme under grant agreement No. 640216 (FLARECAST project). MKG also acknowledges research performed under the A-EFFort project and subsequent service implementation, supported under ESA Contract number 4000111994/14/D/MPR. YY was supported by the National Science Foundation under grants ATM 09-36665, ATM 07-16950, ATM-0745744 and by NASA under grants NNX0-7AH78G, NNXO-8AQ90G. YY owes his deepest gratitude to his advisers Prof. Frank Y. Shih, Prof. Haimin Wang and Prof. Ju Jing for long discussions, for reading previous drafts of his work and providing many valuable comments that improved the presentation and contents of this work. JMA was supported by NSF Career Grant AGS-1255024 and by a NMSU Vice President for Research Interdisciplinary Research Grant