Control of Aflatoxin Production Using Herbal Plant Extract

The aflatoxins are a group of chemically similar poisonous, carcinogenic fungal secondary metabolites produced by Aspergillus flavus, A. parasiticus, and A. nomius, which are abundant in warm and humid regions of the world. They are probably the most intensively researched toxins in the world due to their carcinogenic and mutagenic effects. Aflatoxins have also been identified as a potential biological weapon for food and water contamination. The four major aflatoxins commonly isolated from different foods and feed stuffs are AFB1, AF B2, AFG1, and AFG2. Aflatoxin contamination of food and feed has gained global significance as a result of its deleterious effects on human as well as livestock health including gastrointestinal dysfunction, reduced feed utilization, anemia, jaundice, liver damage and immunity suppression. The profitability and marketing of various agricultural products are adversely affected by either contamination of aflatoxins or aflatoxin‐producing fungi. The foods at highest risk of aflatoxin contamination are maize, chilies, peanuts, and cotton seeds. There are various physical, chemical, and natural methods investigated to prevent aflatoxin production and the growth of aflatoxin‐producing fungus in various agricultural products. Here, we describe various natural plant extracts that would be potential source of controlling aflatoxin production in agricultural products

Physio-biochemical responses and defining selection criteria for drought tolerance in Sorghum bicolor

Forty cytoplasmic male sterile (CMS) sorghum lines were evaluated for different physiological and biochemicaltraits under drought stress. Considerable genetic variability was found among all physio-biochemical traits i.e.water potential (Ψ w), stomatal conductance (gs), photosynthetic efficiency, acid detergent fiber (ADF), neutraldetergent fiber (NDF), ash and sugar contents. Results indicated that ash contents were found to be most adverselyaffected by drought stress followed by sugar contents and stomatal conductance respectively. However, thevalues of crude protein, acid detergent fiber (ADF) and neutral detergent fiber (NDF) were observed to be increaseunder stress condition. Principal component analysis (PCA) was applied to recognize drought tolerant lines.Selection criteria was based upon findings of correlation analysis among all studied traits. The positive associationof water potential, stomatal conductance and photosynthetic efficiency with desirable traits viz. ash and sugarcontents; and NDF association with undesirable traits viz. ADF and NDF revealed a way forward to design futurebreeding programs of sorghum crop under the prevailing scenario of climate change

Sorghum an Important Annual Feedstock for Bioenergy

Plant-based renewable biofuels guarantee sustainable solutions to food and energy demands. High-biomass C4 grasses including sugarcane, corn, and sorghum are potential candidates for bioenergy. Among these, sorghum enjoys the status of a highly diverse food, feed, and biofuel source worldwide. The natural attributes like abiotic stress tolerance, diverse genetic base, viable seed industry, and sound breeding system make sorghum a perfect candidate for establishing an efficient and low-cost biofuel industry. Scientists are exploring ways to exploit forage, sweet, and biomass sorghums as climate-smart energy crops. In this context, conventional breeding has played a significant role in developing high-yielding sorghum varieties. For biomass sorghum, stem compositional analysis helps screen low lignin and high polysaccharide types as feedstocks for biofuels. Recent tools of phenomics, genomics, proteomics, and genome editing are key players of designing eco-friendly bioenergy sorghum. Here, we report stem compositional analysis and proteomics-based evaluation of USDA sorghum germplasm as a baseline to develop sorghum as a biofuel feedstock

Screening of Arabidopsis mutants for functional genomic studies

Eight photosynthetic Arabidopsis mutants were screened for co-segregation of a photosynthetic phenotype with the T-DNA insertion. These mutants were selected from 80 photosynthetic mutants with genetic background of Columbia-0. Two different screening approaches were used to study the T-DNA insertion in the genome of mutant Arabidopsis lines. The sulphonamide sulfadiazine was found to be an effective selective agent and a single copy of sulfonamide resistant gene was found to be completely resistant to the optimal concentration i.e., 5mg mL-1. The maximum number of Arabidopsis mutant plants had confirmed insertions. Some of the plants did not show any amplification with gene specific primer combination, and it was assumed that either they were wild type plants or they had random T-DNA insertion and the insertion was not found in the gene under study but it could be found in any where in the genome. Some mutant plants were morphologically different from the wild type plants e.g., ALP105. These plants grew as small in size and dark green in color. After PCR screening with gene specific and T-DNA border primers all such mutant plants were confirmed as heterozygous T-DNA insertion plants

Genetic diversity of rose germplasm in Pakistan characterized by random amplified polymorphic DNA (RAPD) markers

Random amplified polymorphic DNA (RAPD) markers have been found to be very useful in studying the genetic variability of different species, including Rosa. Present studies were undertaken for the identification and  analysis of genetic variation within a collection of 4 species and 30 accessions of rose using RAPD analysis  technique. The results showed the molecular distinctions among the genotypes when analysed using 25 RAPD primers. Total amplified bands were 146, out of which 110 were polymorphic, with an average of seven bands per primer. Maximum number of bands (10) was produced by primer GLD-20, while GLC-02 produced the  minimum number of bands (2). Maximum polymorphism in the present study was obtained by primer GLA-03, GLA-05, GLA-07, GLA-10, GLC-02, GLC-06, GLC-08, GLC-10, OPG-11 and OPE-19 which produced 100%  polymorphic bands, while primer GLB-11 produced only 42.85% polymorphic bands. This study demonstrated the potential of RAPD technique for the characterization of genetic variation within the rose germplasm.Key words: Random amplified polymorphic DNA, polymorphism, rose germplasm, primer

Genetic Improvement of Sorghum for Biomass Traits Using Genomics Approaches

Nonrenewable energy resources deplete with the passage of time due to rapid increase in industrialization and population. Hence, countries worldwide are investing dearly in substitute energy resources like biofuel from miscellaneous set of feedstocks. Among the energy crops, sorghum serves as a model crop due to its drought tolerance, small genome size (730 Mb), high biomass, dry matter contents, quick growth, wide adaptability to diverse climatic and soil conditions and C4 photosynthesis. Sweet sorghum with high sugar content in stalk is an efficient feedstock for advanced biofuels and other bio-based products from sugars. However, high biomass sorghum has the utility as a feedstock for cellulosic biofuels. The enhanced yield of monomeric carbohydrates is a key to cheap and efficient biofuel production. The efficiency of lignocellulosic biofuels is compromised by recalcitrance to cell wall digestion, a trait that cannot be efficiently improved by traditional breeding. Therefore, scientists are looking for solutions to such problems in biomass crop genomes. Sorghum genome has been completely sequenced and hence this crop qualifies for functional genomics analysis by fast forward genetic approaches. This chapter documents the latest efforts on advancement of sorghum for biomass potential at morphological and molecular level by exploiting genomics approaches

Perception and knowledge about dietary intake in patients with liver cirrhosis and its relationship with the level of education

Objective: To determine patients perception and knowledge regarding diet in cirrhosis and its relationship with the level of patients education. Study Design: Cross-sectional observational study. Place and Duration of Study: This study was conducted at Gastroenterology Outpatient Clinics at the Aga Khan University Hospital, Karachi, the Aga Khan Health Services, Malir, Karachi and Hamdard University, Karachi, from January to December 2010. Methodology: Consecutive adult patients with compensated cirrhosis were enrolled. Demographic data, level of education, type and reason of food restriction as well as the source of dietary information was asked. Baseline laboratory test were performed, and nutritional status was assessed by BMI normogram. Results: Ninety patients, 58% male were enrolled. Mean age of the patient was 49 11 years. Overall 73% of the patients were restricting fat, meat, fish and eggs in their diet; 53% were in uneducated group and 47% were in educated group (CI, 0.24-1.62, p-0.34). Twenty two patients (62.8%) in uneducated and 21 in educated group (68%) were restricting diet on the advice of their doctors, whereas 13 in uneducated group (37%) and 11 in educated group (32%) believed these dietary components to be harmful for the liver. Thirty two of uneducated patient (71.1%) and 28 of educated patients (62.2%) believed that vegetables, fruits and sugarcane had a beneficial effect on the liver. Main source of dietary information to the patients was the doctor. On sub-group analysis those who restricted diet irrespective of their educational level, had more patients with BMI less than 18.5 kg/m2, (CI 0.01-0.94, p-0.001), haemoglobin less than 12 g/dl (CI 0- 0.03, p-0.001) and serum albumin less than 3 g/dl (CI 0.1- 03, p-0.001). Conclusion: Both educated and uneducated classes of the patients have improper knowledge and perception of diet in cirrhosis. Patients with cirrhosis who restricted diet, had relatively low BMI, haemoglobin and albumin as compared to those who did not restrict. Main source of dietary information to cirrhotic patients were health care personnels

MORBIDITY AND MORTALITY ASSESSMENT IN ACUTE HEPATITIS-E.

Background: Hepatitis-E is an enterically transmitted virus causing acute hepatitis. Mostly it is a self-limiting clinical course, but can be life threatening in certain high risk groups. Pakistan is endemic for Hepatitis-E with limited published literature. The aim of this study is to evaluate the predictors of mortality in patients with acute Hepatitis-E. Methods: We analyzed the medical records of 369 adult patients with Hepatitis-E infection admitted at Aga khan University Hospital, from January 1996 to December 2010. Details of their laboratory investigations, clinical course and complications such as FHF and mortality were noted. The outcome was compared, and determinants of mortality were evaluated in important patient subgroups. Results: Out of 369 patients with Hepatitis-E, 326 (88.3%) were discharged after full recovery. Out of these 22 (6%) patients had chronic liver disease CLD in this study, of whom 10 (2.7%) expired (p-value \u3c0.001). There were about 67 (18%) pregnant patients, with a mean gestational age of 29.19±7.68 weeks and 5 (1.4%) pregnant patients died (p-value=0.23). A total of 58 (15.7%) patients were co-infected with other hepatotropic virus, and a comparison did not find an increased risk of mortality in this group. Conclusion: This study showed that Hepatitis-E is significantly associated with mortality in patients suffering from pre-existing chronic liver disease. Pregnancy was not a determinant of mortality in Hepatitis-E patients in this study, and neither was co-infection with other Hepatotropic viruses

Genetic Variability through Induced Mutation

The success of plant breeding is based on the accessibility of genetic variation, information about desired traits with well-organized approach that make it likely to develop existing genetic resources. Food security demands to break the yield barrier through increasing new cultivars which can adapt to wide range of environment. It is especially important to observe the character association for yield along with its components before recognizing novel technique to break the yield barrier. There are numerous methods for improved exploiting of the inherent genetic makeup of crops with heritable variations. It is recommended that recognized parental resources can also be induced to mutate for unmasking novel alleles of genes that organize the traits suitable for the crop varieties of the 21st century world. Chemical mutagens have extensively been applied to make genetic changes in crop plants for breeding investigation as well as genetic studies. Ethyl methane sulphonate (EMS) is the most frequently applied as chemical agents in plants. EMS normally induces GC → AT transitions in the genome causing mutated protein that performed different functions rather than normal. It is exposed that the utilization of EMS is an efficient approach for developing novel gene pool

Anti-Helicobacter pylori activity and inhibition of Helicobacter pylori-induced release of IL-8 in AGS cells by plant extracts

Plants used in popular diet were studied for anti-Helicobacter pylori activity and their effect on the expression of interleukin-8 (IL-8) from H. pylori infected gastric epithelial cells. Extracts were prepared of Allium sativum (A. sativum), Cuminum cyminum (C. cyminum),Piper nigrum (P. nigrum) and their mix in two different dilutions. AGS cell line and H. pyloristrains were used for co-culture experiments. Extracts bactericidal activity was determined by a viable colony count. ELISA (Enzyme linked immunosorbent assay) was used to determine IL-8 expression. DNA extracted from bacterial cells was used for polymerase chain reaction (PCR) of cytotoxin-associated gene (cagA) and E (cagE). Results revealedH. pylori strains sensitivity to A. sativum (5.5 mg/ml) was 57% (39/69) (p=0.06), and to 11 mg/ml was 65% (45/69) (p=0.02) compared to amoxicillin, respectively. CagE positive H. pylori, 37% (11/30) (p=0.02) were sensitive to plant mixture (23.5 mg/ml), 60% (18/30) (pC. cyminum (PP. nigrum (P=0.0046) and A. sativum(P=0.0021), respectively compared to positive and negative controls. Thus, dietary plants demonstrated an anti-H. pylori effect. They reduced IL-8 expression from the H. pyloriinfected AGS cells. Key words: Helicobacter pylori; Allium sativum, Cuminum cyminum, Piper nigrum, gastric epithelial cells, interleukin-8, ELISA, cagA, cagE