The interaction of amyloid A beta(1-40) with lipid bilayers and ganglioside as studied by P-31 solid-state NMR

Amyloid P-peptide (A beta) is a major component of plaques in Alzheimer's disease, and formation of senile plaques has been suggested to originate fro m regions of neuronal membrane rich in gangliosides. We analyzed the mode of interaction of A beta with lipid bilayers by multinuclear NMR using P-31 nuclei. We found that A beta (1-40) strongly perturbed the bilayer structure of dimyristoylphosphatidylcholine (DMPQ, to form a non-lamellar phase (most likely micellar). The ganglioside GM1 potentiated the effect of A beta (1-40), as viewed from P-31 NMR. The difference of the isotropic peak intensity between DMPC/A beta and DMPC/GM1/A beta suggests a specific interaction between A beta and GM1. We show that in the DMPC/GM1/A beta system there are three lipid phases, namely a lamellar phase, a hexagonal phase and non-oriented lipids. The latter two phases are induced by the presence of the A beta peptide, and facilitated by GM1. 9) 2008 Elsevier Ireland Ltd. All rights reserved

Reentrant glass transition in a colloid-polymer mixture with depletion attractions

Performing light scattering experiments we show that introducing short-ranged attraction to a colloidal suspension of nearly hard spheres by addition of free polymer produces new glass transition phenomena. We observe a dramatic acceleration of the density fluctuations amounting to the melting of a colloidal glass. Increasing the strength of the attractions the system freezes into another nonergodic state sharing some qualitative features with gel states occurring at lower colloid packing fractions. This reentrant glass transition is in qualitative agreement with recent theoretical predictions.Comment: 14 pages, 3 figure

Genetic structure of Ilyoplax delsmani (Crustacea: Decapoda: Brachyura: Dotillidae) on the western Indonesian waters

The 5th International Conference on Biosciences 02/08/2023 - 03/08/2023 Bogor, IndonesiaEstuarine crab disperses passively to different areas during their larval stage through sea currents. Ilyoplax delsmani, one of the estuarine crabs, is widely distributed in the Indo-Malaysia Archipelago. The present study aims to discern the genetic structure of Ilyoplax delsmani in the western part of Indonesia. Specimens were collected from three sites, i.e. one site in Kalimantan and two sites in Java Island. We analyzed the genetic structure of I. delsmani with COI gene using MEGA-X, DNASP v6.12.03, Arlequin v3.5.2.2., and Network v10.2. The constructed phylogenetic tree with MEGA-X with maximum likelihood (ML) using Kimura 2 parameter based on the COI gene revealed two distinct clades, i.e., Kalimantan_5133-Java_5135 as Clade 1 and Java_5136 as Clade 2. The genetic distance within the clade range from 0.2% to 2.2%, meanwhile the distance between the clades is approximately 19.3%–20.7%. Moreover, the haplotype network and FST values calculated between pairs of localities generate a congruent result with the phylogenetic tree. Through calculation using MEGA-X, we estimate that the divergence time between both clades is approximately 42.49 mya, aligning with the middle Eocene period. Hence, we deduce that both clades represent distinct species

Nighttime temperature treatment of fruit clusters of ‘Aki Queen’ grapes during maturation and its effect on the skin color and abscisic acid content

Research Note

Erratum

Nighttime temperature treatment of fruit clusters of 'Ald Queen' grapes during maturation and its effects ofn the sldn color and abscisic acid contentVitis 46 (4), 208-209 (2007

Surface-mediated attraction between colloids

We investigate the equilibrium properties of a colloidal solution in contact with a soft interface. As a result of symmetry breaking, surface effects are generally prevailing in confined colloidal systems. In this Letter, particular emphasis is given to surface fluctuations and their consequences on the local (re)organization of the suspension. It is shown that particles experience a significant effective interaction in the vicinity of the interface. This potential of mean force is always attractive, with range controlled by the surface correlation length. We suggest that, under some circumstances, surface-induced attraction may have a strong influence on the local particle distribution

Helical Tubes in Crowded Environments

When placed in a crowded environment, a semi-flexible tube is forced to fold so as to make a more compact shape. One compact shape that often arises in nature is the tight helix, especially when the tube thickness is of comparable size to the tube length. In this paper we use an excluded volume effect to model the effects of crowding. This gives us a measure of compactness for configurations of the tube, which we use to look at structures of the semi-flexible tube that minimize the excluded volume. We focus most of our attention on the helix and which helical geometries are most compact. We found that helices of specific pitch to radius ratio 2.512 to be optimally compact. This is the same geometry that minimizes the global curvature of the curve defining the tube. We further investigate the effects of adding a bending energy or multiple tubes to begin to explore the more complete space of possible geometries a tube could form.Comment: 10 page

Entropic torque

Quantitative predictions are presented of a depletion-induced torque and force acting on a single colloidal hard rod immersed in a solvent of hard spheres close to a planar hard wall. This torque and force, which are entirely of entropic origin, may play an important role for the key-lock principle, where a biological macromolecule (the key) is only functional in a particular orientation with respect to a cavity (the lock)