Optimality-Based Non-Redfield Plankton-Ecosystem Model (OPEMv1.0) in the UVic-ESCM 2.9. Part I: Implementation and Model Behaviour

Uncertainties in projections from Earth system models (ESMs) are associated to a large degree with the imperfect representation of the marine plankton ecosystem, in particular the physiology of primary and secondary producers. Here we describe the implementation of an optimality-based plankton-ecosystem model (OPEM) with variable C:N:P stoichiometry in the University of Victoria ESM (UVic) and the behaviour of two calibrated reference configurations, which differ in the assumed temperature dependence of diazotrophs. Predicted tracer distributions of oxygen and dissolved inorganic nutrients are similar to those of an earlier fixed-stoichiometry model (Keller et al., 2012). Compared to the classic fixed-stoichiometry model, OPEM is closer to recent satellite-based estimates of net community production (NCP), despite overestimating net primary production (NPP), can better reproduce deep-ocean gradients in the NO3:PO43− ratio, and partially explains observed patterns of particulate C:N:P in the surface ocean. Allowing diazotrophs to grow (but not necessarily fix N2) at similar temperatures as other phytoplankton results in a better representation of surface Chl and NPP in the Arctic and Antarctic Oceans. Deficiencies of our calibrated OPEM configurations may serve as a magnifying glass for shortcomings in global biogeochemical models and hence guide future model development. The overestimation of NPP at low latitudes indicates the need for improved representations of temperature effects on biotic processes, as well as phytoplankton community composition, which may be represented by locally-varying parameters based on suitable trade-offs. Discrepancies between observed and predicted vertical gradients in particulate C:N:P ratios suggest the need to include preferential P remineralisation, which could also benefit the representation of N2 fixation. While OPEM yields a much improved distribution of surface N* (NO3− 16·PO43− + 2.9 mmol m−3), it still fails to reproduce observed N* in the Arctic, possibly related to a mis-representation of the phytoplankton community there and the lack of benthic denitrification in the model. Coexisting ordinary and diazotrophic phytoplankton can exert strong control on N* in our simulations, which questions the interpretation of N* as reflecting the balance of N2 fixation and denitrification

Seasonal modulation of phytoplankton biomass in the Southern Ocean

Phytoplankton are biogeochemically important but the drivers of their seasonal cycles in the Southern Ocean are poorly resolved. Here the authors use seven years of ARGO float data to measure bloom initiation, decline and termination throughout the Southern Ocean, finding that bloom dynamics are especially sensitive to the coupling between cell division rates and loss processes

Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone

Oxygen minimum zones are expanding globally, and at present account for around 20–40% of oceanic nitrogen loss. Heterotrophic denitrification and anammox—anaerobic ammonium oxidation with nitrite—are responsible for most nitrogen loss in these low-oxygen waters. Anammox is particularly significant in the eastern tropical South Pacific, one of the largest oxygen minimum zones globally. However, the factors that regulate anammox-driven nitrogen loss have remained unclear. Here, we present a comprehensive nitrogen budget for the eastern tropical South Pacific oxygen minimum zone, using measurements of nutrient concentrations, experimentally determined rates of nitrogen transformation and a numerical model of export production. Anammox was the dominant mode of nitrogen loss at the time of sampling. Rates of anammox, and related nitrogen transformations, were greatest in the productive shelf waters, and tailed off with distance from the coast. Within the shelf region, anammox activity peaked in both upper and bottom waters. Overall, rates of nitrogen transformation, including anammox, were strongly correlated with the export of organic matter. We suggest that the sinking of organic matter, and thus the release of ammonium into the water column, together with benthic ammonium release, fuel nitrogen loss from oxygen minimum zones