Nuisance growth of Juncus bulbosus: the roles of genetics and environmental drivers tested in a large-scale survey

1. Invasive species can transform aquatic ecosystems, and the nuisance growth of the freshwater macrophyte Juncus bulbosus has become a problem in many lakes and rivers in northern Europe. It affects biodiversity strongly and conflicts with human uses, not least compromising the generation of hydroelectricity. The causes of the proliferation of these massive stands of J. bulbosus are not finally resolved, however. 2. In this study, a wide range of catchment, lake and sediment parameters (n = 34) were assessed for 139 lakes in Southern Norway, with the aim of explaining the presence or absence of J. bulbosus and to assess potential drivers behind its prolific growth. 3. Juncus bulbosus was more often present in lakes with lower pH and phosphate concentrations, and a higher element ratio of dissolved inorganic nitrogen (DIN) to total phosphorus (DIN : TotP). 4. Despite the many parameters measured across substantial environmental gradients, none explained nuisance growth. Genetic screening (amplified fragment length polymorphism fingerprinting) of plants from a subset of lakes and additional river sites also showed no genetic differences between the various growth forms. A macrophyte trophic index, however, suggested that the most problematic growth occurred in the most oligotrophic lakes. 5. The lack of consistent patterns may reflect either factors not assessed in our survey, or that the current extension of stands represents a gradual cumulative response over time, not characterised effectively in our snapshot survey. Nevertheless, we can now exclude some putative causes of nuisance growth, including in particular genetics and N‐deposition.acceptedVersio

What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?

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Crop adaptation to climate change in the semi-arid zone in Tanzania: the role of genetic resources and seed systems

Background: Rural livelihoods relying on agriculture are particularly vulnerable to climate change. Climate models project increasingly negative effects on maize and sorghum production in sub-Saharan Africa. We present a case study of the role of genetic resources and seed systems in adapting to climatic stress from the semi-arid agroecological zone in Tanzania. Results: Crop adaptation, switching to more drought-tolerant crop species or varieties, is an important adaptation strategy within a diverse portfolio of livelihood responses to climatic stress. Crop adaptation involves the adoption of improved maize varieties combined with continued use of local varieties of both maize and sorghum. Regression modelling shows that households receiving the extension service and owning livestock are more likely to switch to drought-tolerant varieties as a response to climatic stress than those without access to these assets. The seed system in the study area consists of both formal and informal elements. The informal channels supply the highest quantities of both sorghum and maize seeds. Recycling of improved varieties of maize is common and the majority of households practice seed selection. Detailed assessment of the three different categories of genetic resources – local, improved and farmer-recycled varieties – reveals that drought tolerance is more frequently reported as a reason for growing local varieties than for growing improved varieties of maize and sorghum. The significantly later maturity reported for local varieties compared to the improved varieties bred to have a short growing cycle indicates that households distinguish between drought-tolerance and drought-avoidance traits. Conclusions: Seed system perspectives on crop adaptation offer insights into the complex ways crop adaptation is realized at the livelihood level. The integration of informal and formal seed system elements is important for the adaptive capacity of agriculture-based livelihoods. Our findings highlight the value and importance of location-specific information about crop variety use for arriving at realistic recommendations in impact and adaptation studies

Modern maize varieties going local in the semi-arid zone in Tanzania

Background: Maize is the most produced crop in Sub-Saharan Africa, but yields are low and climate change is projected to further constrain smallholder production. The current efforts to breed and disseminate new high yielding and climate ready maize varieties are implemented through the formal seed system; the chain of public and private sector activities and institutions that produce and release certified seeds. These efforts are taking place in contexts currently dominated by informal seed systems; local and informal seed management and exchange channels with a long history of adapting crops to local conditions. We here present a case study of the genetic effects of both formal and informal seed management from the semi-arid zone in Tanzania. Results: Two open pollinated varieties (OPVs), Staha and TMV1, first released by the formal seed system in the 1980s are cultivated on two-thirds of the maize fields among the surveyed households. Farmer-recycling of improved varieties and seed selection are common on-farm seed management practices. Drought tolerance and high yield are the most important characteristics reported as reason for cultivating the current varieties as well as the most important criteria for farmers’ seed selection. Bayesian cluster analysis, PCA and FST analyses based on 131 SNPs clearly distinguish between the two OPVs, and despite considerable heterogeneity between and within seed lots, there is insignificant differentiation between breeder’s seeds and commercial seeds in both OPVs. Genetic separation increases as the formal system varieties enter the informal system and both hybridization with unrelated varieties and directional selection probably play a role in the differentiation. Using a Bayesian association approach we identify three loci putatively under selection in the informal seed system. Conclusions: SOur results suggest that the formal seed system in the study area distributes seed lots that are true to type. We suggest that hybridization and directional selection differentiate farmer recycled seed lots from the original varieties and potentially lead to beneficial creolization. Access to drought tolerant OPVs in combination with farmer seed selection is likely to enhance seed system security and farmers’ adaptive capacity in the face of climate change

Spatial Structure and Climatic Adaptation in African Maize Revealed by Surveying SNP Diversity in Relation to Global Breeding and Landrace Panels

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Effects of competition and climate on a crop pollinator community

Plant-pollinator interactions are ubiquitous in nature where both wild and domesticated pollinators interact with wild plant communities and entomophilous crops. Honeybees are important pollinators in many crop systems, but recent declines in honeybee stocks in Europe and the US have caused concern about the sustainability of crop systems solely depending on honeybees. In addition, several studies have shown that honeybees might negatively affect native pollinator populations, bumblebees in particular. Here we have studied flower visitation to two raspberry farms and surrounding wildflower communities in SE Norway. Bumblebees were excluded from the raspberry field by means of exploitative competition from honeybees ( > 97% of flower visits in the raspberry fields were conducted by honeybees). More than 55% of the visits recorded in wild plant communities surrounding the farms were conducted by bumblebees, showing that bumblebees were present in the system. Pollinator taxa were affected differently by temperature; honeybee visits showed a unimodal relationship with maximum flower visitation activity at a temperature of 24.1 °C, while flower visits by bumblebees showed a positive, linear relationship with temperature. The effect of temperature was much weaker for bumblebees than for honeybees (∼2.2% of the variation was explained by temperature, compared to ∼46% for honeybees). Farming practice affected flower visitation, as flowers within growing tunnels received fewer visits. However, the number of flower visits, also within the growing tunnels, was far above what other studies have shown to be sufficient for optimal pollination in raspberry. We conclude that the raspberry fields were sufficiently pollinated by honeybees but that the system should be considered vulnerable as it is solely dependent on this particular pollinator species. The honeybees were sensitive to ambient temperature suggesting that they might suffer more from future climate change than bumblebees

Hybrid origins of carex rostrata var. borealis and C. stenolepis, two problematic taxa in carex section vesicariae (cyperaceae)

Hybridization is frequent in the large and ecologically significant genus Carex (Cyperaceae). In four important sections of the northern regions (Ceratocystis, Glareosae, Phacocystis and Vesicariae), the frequent occurrence of hybrids often renders the identification of “pure” species and hybrids difficult. In this study we address the origins and taxonomic rank of two taxa of section Vesicariae: Carex rostrata var. borealis and C. stenolepis. The origin and taxonomic status of C. stenolepis has been the subject of substantial debate over the years, whereas C. rostrata var. borealis has received very little attention in the years since its first description in the 19th century. By performing an extensive sampling of relevant taxa from a broad distribution range, and analyzing data from fifteen microsatellite loci developed specifically for our study together with pollen stainability measures, we resolve the hybrid origins of C. rostrata var. borealis and C. stenolepis and provide new insights into this taxonomically challenging group of sedges. Our results are in accordance with previous findings suggesting that C. stenolepis is a hybrid between C. vesicaria and C. saxatilis. They are also in accordance with a previous proposition that C. rostrata var. borealis is a hybrid between C. rostrata and C. rotundata, and furthermore suggest that both hybrids are the result of multiple, recent (i.e., postglacial) hybridization events. We found little evidence for successful sexual reproduction within C. rostrata var. borealis and C. stenolepis, but conclude that the common and recurrent, largely predictable occurrence of these taxa justifies accepting both hybrids as hybrid species with binomial names. There are, however, complications as to types and priority names, and we therefore choose to address these problems in a separate paper

RADseq provides evidence for parallel ecotypic divergence in the autotetraploid Cochlearia officinalis in Northern Norway

Speciation encompasses a continuum over time from freely interbreeding populations to reproductively isolated species. Along this process, ecotypes – the result of local adaptation – may be on the road to new species. We investigated whether three autotetraploid Cochlearia officinalis ecotypes, adapted to different habitats (beach, estuary, spring), are genetically differentiated and result from parallel ecotypic divergence in two distinct geographical regions. We obtained genetic data from thousands of single nucleotide polymorphisms (SNPs) from restriction-site associated DNA sequencing (RADseq) and from six microsatellite markers for 12 populations to assess genetic divergence at ecotypic, geographic and population level. The genetic patterns support differentiation among ecotypes as suggested by morphology and ecology. The data fit a scenario where the ancestral beach ecotype has recurrently and polytopically given rise to the estuary and spring ecotypes. Several ecologically-relevant loci with consistent non-random segregating patterns are identified across the recurrent origins, in particular around genes related to salt stress. Despite being ecologically distinct, the Cochlearia ecotypes still represent an early stage in the process of speciation, as reproductive isolation has not (yet) developed. A sequenced annotated genome is needed to specifically target candidate genes underlying local adaptation

Multiple Genetic Trajectories to Extreme Abiotic Stress Adaptation in Arctic Brassicaceae

Abstract Extreme environments offer powerful opportunities to study how different organisms have adapted to similar selection pressures at the molecular level. Arctic plants have adapted to some of the coldest and driest biomes on Earth and typically possess suites of similar morphological and physiological adaptations to extremes in light and temperature. Here, we compare patterns of molecular evolution in three Brassicaceae species that have independently colonized the Arctic and present some of the first genetic evidence for plant adaptations to the Arctic environment. By testing for positive selection and identifying convergent substitutions in orthologous gene alignments for a total of 15 Brassicaceae species, we find that positive selection has been acting on different genes, but similar functional pathways in the three Arctic lineages. The positively selected gene sets identified in the three Arctic species showed convergent functional profiles associated with extreme abiotic stress characteristic of the Arctic. However, there was little evidence for independently fixed mutations at the same sites and for positive selection acting on the same genes. The three species appear to have evolved similar suites of adaptations by modifying different components in similar stress response pathways, implying that there could be many genetic trajectories for adaptation to the Arctic environment. By identifying candidate genes and functional pathways potentially involved in Arctic adaptation, our results provide a framework for future studies aimed at testing for the existence of a functional syndrome of Arctic adaptation in the Brassicaceae and perhaps flowering plants in general

Testing hypotheses of hybrid origins for two seashore species of Carex section Phacocystis (Cyperaceae)

Abstract Taxonomists have proposed numerous hybrid species in plants, but to gain a better understanding of the role that hybridization may play in plant diversification, such taxonomic hypotheses must be tested using genomic data. In this study, we employ ddRAD sequence data to test taxonomic hypotheses of hybrid origins in Carex salina and C. ramenskii (Carex section Phacocystis). Sequence data from multiple Norwegian and Icelandic populations of the putative hybrid and parental species were generated for hundreds of ddRAD loci. These data were used to estimate geographical structuring of genetic diversity and admixture and to explicitly test for hybrid origins using several analytical approaches. Our results indicate recurrent hybrid origins for the populations of C. salina and C. ramenskii sampled in our study and show that these populations are characterized by high interspecific heterozygosity. Our results support the idea that hybridization may indeed play an important role in the diversification of lineages of Carex and highlight the important role that clonal propagation might play in maintaining hybrid populations. Future studies focusing on a broader geographical sampling would be needed to assess if the genetic structuring in these Nordic populations reflects range-wide patterns in these hybrid lineages