Reversal of cardiac dysfunction by selective ET-A receptor antagonism

1. The effectiveness of a selective endothelin receptor-A (ET-A) antagonist, A-127722 (approximately 10 mg kg-1 day-1 as 200 mg kg-1 powdered food), to reverse existing cardiac remodelling and prevent further remodelling was tested in deoxycorticosterone acetate (DOCA)-salt hypertensive rats. 2. Uninephrectomised rats (UNX) administered DOCA (25mg every 4th day sc) and 1% NaCl in drinking water for 28 days developed hypertension (systolic BP: UNX 128 6, DOCA-salt 182 5* mmHg; *P<0.05 vs UNX), left ventricular hypertrophy (UNX 1.99 0.06, DOCA-salt 3.30 0.08* mg/kg body wt), decreased left ventricular internal diameter (UNX 6.69 0.18, DOCA-salt 5.51 0.37* mm), an increased left ventricular monocyte/macrophage infiltration together with an increased interstitial collagen from 2.7 0.3 to 11.7 1.3%, increased passive diastolic stiffness (UNX 21.1 0.5, DOCA-salt 30.1 1.3*), prolongation of the action potential duration at 20% and 90% of repolarization (APD20 - UNX 6.8 1.1, DOCA-salt 10.1 1.5* msec; APD90 - UNX 34.4 3.5, DOCA-salt 64.3 10.4* msec) and vascular dysfunction (2.6 fold decrease in maximal contractile response to noradrenaline, 3.5 fold decrease in maximal relaxation response to acetylcholine). 3. Administration of A-127722 for 14 days starting 14 days after surgery attenuated the increases in systolic blood pressure (150 6** mmHg, **P<0.05 vs DOCA-salt), left ventricular wet weight (2.65 0.06** mg/kg body wt) and internal diameter (6.39 0.31** mm), prevented left ventricular monocyte/macrophage accumulation, attenuated the increased left ventricular interstitial collagen (7.6 1.3%**), reversed the increased passive diastolic stiffness (22.1 1.2**), attenuated the action potential duration prolongation (APD20 - 7.6 1.4**, APD90 - 41.5 6.9** msec) and normalized changes in vascular function. 4. ET-A receptor antagonism both reverses and prevents the cardiac and vascular remodelling in DOCA-salt hypertension and improves cardiovascular function

Rarefied gas dynamic simulations of planetary atmospheric systems

My doctoral research involves the advanced numerical simulation of rarefied (low-pressure) planetary atmospheres and volcanism with advanced physical modeling, in application of the Direct Simulation Monte Carlo (DSMC) method. This method is the approach of choice for modeling a wide range of continuum-to-rarefied systems - in which the average spacing between molecules in the flow becomes comparable to the flow length scales, and in which traditional means of computing fluid dynamics with the partial differential equations of continuum theory break down. DSMC is a probabilistic technique by which the motions and collisions of representative molecules are computed. Multiple gas species are modelled, along with non-equilibrium radiation, high speed collisions, photochemistry, and a wide range of other relevant physics. Comprehensive atmospheric simulations are computed in parallel on one- and three-dimensional domains that, depending on the scope of a particular project, can span entire atmospheric systems from planetary surface through vacuum. These projects are ongoing efforts in modeling and understanding global-scale atmospheric flows and the processes by which such flows are populated and propagated, and they represent advancements of the state-of-the-art in planetary atmospheric simulation. I have produced and presented research on four distinct topics: 1) simulations of the complete atmosphere of Jupiter's volcanic moon Io including sublimation and plasma-sputtering processes; 2) the creation of a novel neutral density model for Earth's upper-atmosphere in partnership with Los Alamos' ISR division; 3) multi-species simulations of the rarefied gas dynamic, transfer, and escape processes of the Pluto-Charon system; and 4) investigations of the canopy unsteadiness and development of transient filamentary structure as observed by the New Horizons probe at the Ionian Tvashtar plume site. In the course of these projects, and using my research group's existing planetary-science DSMC code as a foundation, I have developed a novel, generalized framework for rarefied atmospheric simulation that enables efficient and thorough construction of entire upper-atmospheric models. My dissertation offers an analysis of the methodology of rarefied gas dynamic planetary atmospheric simulation, in addition to discussion of each project's scientific context, the results of my simulations, and their relevance toward the explanation of various observed phenomena in planetary atmospheric science.Aerospace Engineerin

Microtopographic refuges enhance recruitment and survival, but inhibit growth of propagules of the tropical macroalga Sargassum swartzii

For organisms with discrete life-histories, any mechanism that enhances growth and/or survival at critical life-history transitions may significantly influence adult population size. On coral reefs, structurally complex microhabitats enhance the early post-settlement growth and/or survival of fishes and corals; however, the importance of such microhabitats to the early life stages of tropical macroalgae is largely unknown. Here, we investigate the effect of crevices on the recruitment, growth and survival of propagules of a common coral reef macroalga, Sargassum swartzii. We settled S. swartzii propagules onto terracotta settlement tiles that had a series of 3 mm deep crevices evenly spaced on their top (exposed) surface. Recruitment of S. swartzii was 21% greater, but propagules were 18% shorter, 18-days post-settlement within crevices than on adjacent exposed surfaces. Exposing tiles to local fish assemblages for five days showed that survival of propagules was 90% greater in crevices than on exposed areas of the tiles on the reef crest, but not on the reef flat. Underwater video footage revealed that few fishes fed from within the crevices (18% of all bites) with the majority of feeding being concentrated on the exposed surface of tiles. Interestingly, small-bodied fishes from the family Blenniidae (predominantly Ecsenius spp.) accounted for the majority of the feeding activity on the tiles, and likely contributed to the mortality of propagules. Structurally complex microhabitats, such as crevices, that shelter vulnerable early post-settlement propagules from herbivory may therefore be important for the persistence of macroalgae on coral reefs

Biology of Parrotfishes

Parrotfish are found on almost every coral reef in the world. This ubiquity and uniqueness of their feeding action make them one of the most important groups of fishes within coral reef ecosystems. But why, exactly, are parrotfish so important to reefs? Can the evolution of a particular jaw morphology and feeding action really have had such a large impact on the health and functioning of the world's coral reefs? This book introduces the reader to this fascinating group of fishes (Labridae, Scarinae), from the morphological innovation of a jaw that has the power to bite through solid calcium carbonate, to the threats currently faced by parrotfish populations around the world. It contains new insights into their diet and food processing ability, and lifehistories, and concludes with an overview of emerging and future research directions

Relational Approach to Knowledge Engineering for POMDP-based Assistance Systems as a Translation of a Psychological Model

Assistive systems for persons with cognitive disabilities (e.g. dementia) are difficult to build due to the wide range of different approaches people can take to accomplishing the same task, and the significant uncertainties that arise from both the unpredictability of client's behaviours and from noise in sensor readings. Partially observable Markov decision process (POMDP) models have been used successfully as the reasoning engine behind such assistive systems for small multi-step tasks such as hand washing. POMDP models are a powerful, yet flexible framework for modelling assistance that can deal with uncertainty and utility. Unfortunately, POMDPs usually require a very labour intensive, manual procedure for their definition and construction. Our previous work has described a knowledge driven method for automatically generating POMDP activity recognition and context sensitive prompting systems for complex tasks. We call the resulting POMDP a SNAP (SyNdetic Assistance Process). The spreadsheet-like result of the analysis does not correspond to the POMDP model directly and the translation to a formal POMDP representation is required. To date, this translation had to be performed manually by a trained POMDP expert. In this paper, we formalise and automate this translation process using a probabilistic relational model (PRM) encoded in a relational database. We demonstrate the method by eliciting three assistance tasks from non-experts. We validate the resulting POMDP models using case-based simulations to show that they are reasonable for the domains. We also show a complete case study of a designer specifying one database, including an evaluation in a real-life experiment with a human actor

Coral species composition drives key ecosystem function on coral reefs

Rapid and unprecedented ecological change threatens the functioning and stability of ecosystems. On coral reefs, global climate change and local stressors are reducing and reorganizing habitat-forming corals and associated species, with largely unknown implications for critical ecosystem functions such as herbivory. Herbivory mediates coral–algal competition, thereby facilitating ecosystem recovery following disturbance such as coral bleaching events or large storms. However, relationships between coral species composition, the distribution of herbivorous fishes and the delivery of their functional impact are not well understood. Here, we investigate how herbivorous fish assemblages and delivery of two distinct herbivory processes, grazing and browsing, differ among three taxonomically distinct, replicated coral habitats. While grazing on algal turf assemblages was insensitive to different coral configurations, browsing on the macroalga Laurencia cf. obtusa varied considerably among habitats, suggesting that different mechanisms may shape these processes. Variation in browsing among habitats was best predicted by the composition and structural complexity of benthic assemblages (in particular the cover and composition of corals, but not macroalgal cover), and was poorly reflected by visual estimates of browser biomass. Surprisingly, the lowest browsing rates were recorded in the most structurally complex habitat, with the greatest cover of coral (branching Porites habitat). While the mechanism for the variation in browsing is not clear, it may be related to scale-dependent effects of habitat structure on visual occlusion inhibiting foraging activity by browsing fishes, or the relative availability of alternate dietary resources. Our results suggest that maintained functionality may vary among distinct and emerging coral reef configurations due to ecological interactions between reef fishes and their environment determining habitat selection

Variation in the parasite communities of three co-occurring herbivorous coral reef fishes

Parasites are important, diverse, and abundant components of natural ecosystems and can influence the behaviour and health of their hosts, inter- and intraspecific interactions, and ultimately community structure. Coral reefs are one of the world's most biodiverse ecosystems, yet our understanding of the abundance, diversity, and composition of parasite communities of coral reef fishes is limited. Here, the authors aimed to compare the abundance, richness and composition of parasite communities among three co-occurring herbivorous coral reef fishes (the barred rabbitfish Siganus doliatus, Ward's damsel Pomacentrus wardi and the obscure damsel Pomacentrus adelus) from an inshore reef of the Great Barrier Reef (GBR). In total, 3978 parasites (3869 endoparasites and 109 ectoparasites) from 17 families were recovered from 30 individuals of each of the three fish species (mean = 44 ± 22 s.e. parasites per fish; range = 0–1947 parasites per fish). The parasite communities of P. wardi and P. adelus were characterised by pennellid copepods, derogenid and lecithasterid digeneans and were distinct from those of S. doliatus that were characterised by a higher abundance of atractotrematid and gyliauchenid digeneans. The abundance and family richness of all parasites were greatest in S. doliatus (abundance: 22.1 ± 5.0 parasites per fish; richness: 3.2 ± 0.3 families per fish), intermediate in P. wardi (abundance: 4.8 ± 1.1 parasites per fish; richness: 2.3 ± 0.3 families per fish) and lowest in P. adelus (abundance: 1.4 ± 0.4 parasites per fish; richness: 0.9 ± 0.2 families per fish). Similarly, the abundance of endoparasites was greatest in S. doliatus (19.7 ± 5.1 endoparasites per fish), intermediate in P. wardi (2.6 ± 0.7 endoparasites per fish) and lowest in P. adelus (1.2 ± 0.4 endoparasites per fish). Ectoparasite abundances were also lowest for P. adelus (0.2 ± 0.1 ectoparasites per fish), and S. doliatus and P. wardi had comparable abundances of ectoparasites (1.3 ± 0.3 and 2.1 ± 0.5 parasites per fish, respectively). Similarities between the parasite assemblages of the two pomacentrids may be related to their similar behaviours and/or diets vs. those of the larger-bodied and more mobile rabbitfish. Investigating the causes and consequences of variation in parasite communities across a broader range of fish species will be critical to understand the potential role of parasites in coral reef ecosystems

Cascading predator effects in a Fijian coral reef ecosystem

Coral reefs are among Earth's best-studied ecosystems, yet the degree to which large predators influence the ecology of coral reefs remains an open and contentious question. Recent studies indicate the consumptive effects of large reef predators are too diffuse to elicit trophic cascades. Here, we provide evidence that such predators can produce non-consumptive (fear) effects that flow through herbivores to shape the distribution of seaweed on a coral reef. This trophic cascade emerged because reef topography, tidal oscillations, and shark hunting behaviour interact to create predictable "hot spots" of fear on the reef where herbivores withhold feeding and seaweeds gain a spatial refuge. Thus, in risky habitats, sharks can exert strong ecological impacts even though they are trophic generalists that rarely feed. These findings contextualize the debate over whether predators influence coral reef structure and function and move us to ask not if, but under what specific conditions, they generate trophic cascades

The shallow water hard corals of Pulau Weh, Aceh, Indonesia

The corals reefs of Aceh, Indonesia, are one of the few areas of the world where the fauna, in particular the scleractinian corals, have yet to be described. The area is likely to be of high biogeographical significance due to its position at the northern tip of Sumatra on the boundary of three major water bodies, the Indian Ocean, the Andaman Sea and the Straits of Malacca. Here, we present the quantitative description of the assemblage structure of the shallow water scleractinian corals of Pulau Weh. Carbonate reefs are rare on the island, the exception being some fringing reef development in shallow water in at least two locations. Most colonies are attached to granite boulders which make up the ocean floor at most sites on the north and west coast, or rest in the sandy substrates that dominate the ocean floor on the east coast. Coral cover in February 2009 was over 40 % at most sites, ranging from 21 % ± 3.0 SE to 80 % ± 2.4. Coral assemblage structure varied widely around Pulau Weh with assemblages from the western and northern sites being dominated by Acropora spp. in particular, species with digitate, encrusting-arborescent and tabular morphologies. In contrast, coral assemblages on the west coast were dominated by massive Porites spp. and Heliopora. The Acropora fauna is dominated by species with digitate and encrusting arborescent morphologies; very different from many other regions in Indonesia. This unusual species composition plus the presence of a high proportion of endemics indicates that the region should be a high priority for conservation efforts. Further taxonomic studies at depth and further afield are required to fully describe this unique fauna that supports a small diving industry and a number of fisheries

Natural bounds on herbivorous coral reef fishes

Humans are an increasingly dominant driver of Earth's biological communities, but differentiating human impacts from natural drivers of ecosystem state is crucial. Herbivorous fish play a key role in maintaining coral dominance on coral reefs, and are widely affected by human activities, principally fishing. We assess the relative importance of human and biophysical (habitat and oceanographic) drivers on the biomass of five herbivorous functional groups among 33 islands in the central and western Pacific Ocean. Human impacts were clear for some, but not all, herbivore groups. Biomass of browsers, large excavators, and of all herbivores combined declined rapidly with increasing human population density, whereas grazers, scrapers, and detritivores displayed no relationship. Sea-surface temperature had significant but opposing effects on the biomass of detritivores (positive) and browsers (negative). Similarly, the biomass of scrapers, grazers, and detritivores correlated with habitat structural complexity; however, relationships were group specific. Finally, the biomass of browsers and large excavators was related to island geomorphology, both peaking on low-lying islands and atolls. The substantial variability in herbivore populations explained by natural biophysical drivers highlights the need for locally appropriate management targets on coral reefs