Frankenstein 2.0.: Identifying and characterising synthetic biology engineers in science fiction films

Synthetic biology (SB) has emerged as one of the newest and promising areas of bio-technology. Issues typically associated to SB, notably in the media, like the idea of artificial life creation and "real" engineering of life also appear in many popular films. Drawing upon the analysis of 48 films, the article discusses how scientists applying technologies that can be related to SB are represented in these movies. It hereby discusses that traditional clichés of scientists in general tend to be sublated by new stereotypical characterizations. These reflect real trends in bio-technological research such as SB, especially the increased relationship between science and industry. Frankenstein 2.0 looks less like the old, genius yet mad scientist, and follows a more entrepreneurial than academic spirit

Internal waves and mixing near the Kerguelen Plateau

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 417-437, doi:10.1175/JPO-D-15-0055.1.In the stratified ocean, turbulent mixing is primarily attributed to the breaking of internal waves. As such, internal waves provide a link between large-scale forcing and small-scale mixing. The internal wave field north of the Kerguelen Plateau is characterized using 914 high-resolution hydrographic profiles from novel Electromagnetic Autonomous Profiling Explorer (EM-APEX) floats. Altogether, 46 coherent features are identified in the EM-APEX velocity profiles and interpreted in terms of internal wave kinematics. The large number of internal waves analyzed provides a quantitative framework for characterizing spatial variations in the internal wave field and for resolving generation versus propagation dynamics. Internal waves observed near the Kerguelen Plateau have a mean vertical wavelength of 200 m, a mean horizontal wavelength of 15 km, a mean period of 16 h, and a mean horizontal group velocity of 3 cm s−1. The internal wave characteristics are dependent on regional dynamics, suggesting that different generation mechanisms of internal waves dominate in different dynamical zones. The wave fields in the Subantarctic/Subtropical Front and the Polar Front Zone are influenced by the local small-scale topography and flow strength. The eddy-wave field is influenced by the large-scale flow structure, while the internal wave field in the Subantarctic Zone is controlled by atmospheric forcing. More importantly, the local generation of internal waves not only drives large-scale dissipation in the frontal region but also downstream from the plateau. Some internal waves in the frontal region are advected away from the plateau, contributing to mixing and stratification budgets elsewhere.A.M. was supported by the joint CSIRO-University of Tasmania Quantitative Marine Science (QMS) program and the 2009 CSIRO Wealth from Ocean Flagship Collaborative Fund. K.L.P.’s salary support was provided by Woods Hole Oceanographic Institution bridge support funds. B.M.S. was supported by the Australian Climate Change Science Program.2016-06-0

Warm Atlantic water explains observed sea ice melt rates north of Svalbard

Warm Atlantic water (AW) that flows northward along the Svalbard west coast is thought to transport enough heat to melt regional Arctic sea ice effectively. Despite this common assumption, quantitative requirements necessary for AW to directly melt sea ice fast enough under realistic winter conditions are still poorly constrained. Here we use meteorological data, satellite observations of sea ice concentration and drift, and model output to demonstrate that most of the sea ice entering the area over the Yermak Plateau melts within a few weeks. Simulations using the Los Alamos Sea Ice Model (CICE) in a 1‐D vertically resolved configuration under a relatively wide range of in situ observed atmospheric and ocean forcing show a good fit to observations. Simulations require high‐frequency atmospheric forcing data to accurately reproduce vertical heat fluxes between the ice or snow and the atmosphere. Moreover, we switched off hydrostatic equilibrium to properly reproduce ice and snow thickness when observations showed that ice had a negative freeboard, without surface flooding and snow‐ice formation. This modeling shows that realistic melt rates require a combination of warm near‐surface AW and storm‐induced ocean mixing. However, if AW is warmer than usual (>5°C), then lower mixing rates are sufficient. Our results suggest that increased winter storm frequency and increased heat content of the AW may work together in reducing future sea ice cover in the Eurasian basin.publishedVersio

Mixing variability in the Southern Ocean

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 966–987, doi:10.1175/JPO-D-14-0110.1.A key remaining challenge in oceanography is the understanding and parameterization of small-scale mixing. Evidence suggests that topographic features play a significant role in enhancing mixing in the Southern Ocean. This study uses 914 high-resolution hydrographic profiles from novel EM-APEX profiling floats to investigate turbulent mixing north of the Kerguelen Plateau, a major topographic feature in the Southern Ocean. A shear–strain finescale parameterization is applied to estimate diapycnal diffusivity in the upper 1600 m of the ocean. The indirect estimates of mixing match direct microstructure profiler observations made simultaneously. It is found that mixing intensities have strong spatial and temporal variability, ranging from O(10−6) to O(10−3) m2 s−1. This study identifies topographic roughness, current speed, and wind speed as the main factors controlling mixing intensity. Additionally, the authors find strong regional variability in mixing dynamics and enhanced mixing in the Antarctic Circumpolar Current frontal region. This enhanced mixing is attributed to dissipating internal waves generated by the interaction of the Antarctic Circumpolar Current and the topography of the Kerguelen Plateau. Extending the mixing observations from the Kerguelen region to the entire Southern Ocean, this study infers a large water mass transformation rate of 17 Sverdrups (Sv; 1 Sv ≡ 106 m3 s−1) across the boundary of Antarctic Intermediate Water and Upper Circumpolar Deep Water in the Antarctic Circumpolar Current. This work suggests that the contribution of mixing to the Southern Ocean overturning circulation budget is particularly significant in fronts.AM was supported by the joint CSIRO–University of Tasmania Quantitative Marine Science (QMS) program and the 2009 CSIRO Wealth from Ocean Flagship Collaborative Fund. BMS was supported by the Australian Climate Change Science Program, jointly funded by the Department of the Environment and CSIRO. KLPs salary support was provided by Woods Hole Oceanographic Institution bridge support funds.2015-10-0

Atlantic Water Circulation and Properties Northwest of Svalbard During Anomalous Southerly Winds

Atlantic Water (AW), the main source of heat and salt for the Arctic Ocean, undergoes large transformations (cooling and freshening) north of Svalbard as it flows near the surface above the Yermak Plateau (YP). In September 2017, a SeaExplorer ocean glider deployed in the West Spitsbergen Current (WSC) and recovered north of Svalbard documented the circulation and properties of the AW crossing the YP. The glider sampled the different branches of the AW flowing into the Arctic around the YP: the WSC, the Svalbard Branch (SB), the Yermak Pass Branch, and the Yermak Branch. Unusual southerly winds prevailed in summer 2017 impacting AW circulation in the region. Cold and fresh lenses of shelf-origin waters detached from the slope in the WSC to reach their density level below the core of the AW. This resulted in cooling and freshening of the AW inflow from below. The eastward current associated with the SB was found to be weak at its usual location above the 400 m isobath, likely the result of the adjustment of the flow influenced by anomalous southerly wind conditions.publishedVersio

Antarctic circumpolar current impacts on internal wave life cycles

Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 48(8), (2021): e2020GL089471, https://doi.org/10.1029/2020GL089471.Major gaps exist in our understanding of the pathways between internal wave generation and breaking in the Southern Ocean, with important implications for the distribution of internal wave-driven mixing, the sensitivity of ocean mixing rates and patterns to changes in the ocean environment, and the necessary ingredients of mixing parameterizations. Here we assess the dominant processes in internal wave evolution by characterizing wave and mesoscale flow scales based on full-depth in situ measurements in a Southern Ocean mixing hot spot and a ray tracing calculation. The exercise highlights the importance of Antarctic Circumpolar Current jets as a dominant influence on internal wave life cycles through advection, the modification of wave characteristics via wave-mean flow interactions, and the set-up of critical layers for both upward- and downward-propagating waves. Our findings suggest that it is important to represent mesoscale flow impacts in parameterizations of internal wave-driven mixing in the Southern Ocean.The SOFine project was funded by the UK Natural Environmental Research Council (NERC) (grant NE/G001510/1). S. Waterman is currently supported by the National Science and Engineering Research Council of Canada (NSERC) Discovery Grant Program (NSERC-2020-05799). A. Meyer acknowledges current support from the ARC Centre of Excellence for Climate Extremes (CE170100023) and previous support from the joint CSIRO-University of Tasmania Quantitative Marine Science (QMS) program. A. N. Garabato acknowledges the support of the Royal Society and the Wolfson Foundation

The Future of the Arctic: What Does It Mean for Sea Ice and Small Creatures?

The warming of our planet is changing the Arctic dramatically. The area covered by sea-ice is shrinking and the ice that is left is younger and thinner. We took part in an expedition to the Arctic, to study how these changes affect organisms living in and under the ice. Following this expedition, we found that storms can more easily break the thinner ice. Storms form cracks in the sea ice, allowing sunlight to pass into the water below, which makes algal growth possible. Algae are microscopic “plants” that grow in water or sea ice. Storms also brought thick heavy snow, which pushed the ice surface below the water. This flooded the snow and created slush. We discovered that this slush is another good habitat for algae. If Arctic sea ice continues to thin, and storms become more common, we expect that these algal habitats will become more important in the future