Vacuum Cerenkov Radiation in Lorentz-Violating Theories Without CPT Violation

In theories with broken Lorentz symmetry, Cerenkov radiation may be possible even in vacuum. We analyze the Cerenkov emissions that are associated with the least constrained Lorentz-violating modifications of the photon sector, calculating the threshold energy, the frequency spectrum, and the shape of the Mach cone. In order to obtain sensible results for the total power emitted, we must make use of information contained within the theory which indicates at what scale new physics must enter.Comment: 9 page

Cerenkov Radiation in a Lorentz-Violating and Birefringent Vacuum

We calculate the emission spectrum for vacuum Cerenkov radiation in Lorentz-violating extensions of electrodynamics. We develop an approach that works equally well if the presence or the absence of birefringence. In addition to confirming earlier work, we present the first calculation relevant to Cerenkov radiation in the presence of a birefringent photon k_F term, calculating the lower-energy part of the spectrum for that case.Comment: 17 pages, version to appear in Phys. Rev.

Renormalization of Scalar and Yukawa Field Theories with Lorentz Violation

We consider a theory of scalar and spinor fields, interacting through Yukawa and phi^4 interactions, with Lorentz-violating operators included in the Lagrangian. We compute the leading quantum corrections in this theory. The renormalizability of the theory is explicitly shown up to one-loop order. In the pure scalar sector, the calculations can be generalized to higher orders and to include finite terms, because the theory can be solved in terms of its Lorentz-invariant version.Comment: 30 page

Bounds on Spin-Dependent Lorentz Violation From Inverse Compton Observations

Some of the best bounds on possible Lorentz violation in the electron sector come from observations of high-energy astrophysical phenomena. Using measurements of TeV inverse Compton radiation from a number of sources, we place the first bounds--at the 10^(-15) level--on seven of the electron d coefficients.Comment: 10 page

Radiatively Induced Lorentz and Gauge Symmetry Violation in Electrodynamics with Varying alpha

A time-varying fine structure constant alpha(t) could give rise to Lorentz- and CPT-violating changes to the vacuum polarization, which would affect photon propagation. Such changes to the effective action can violate gauge invariance, but they are otherwise permitted. However, in the minimal theory of varying alpha, no such terms are generated at lowest order. At second order, vacuum polarization can generate an instability--a Lorentz-violating analogue of a negative photon mass squared -m^2 proportional to alpha [(d alpha/dt) / alpha]^2 log (Lambda^2), where Lambda is the cutoff for the low-energy effective theory.Comment: 14 page

Correction, improvement and model verification of CARE 3, version 3

An independent verification of the CARE 3 mathematical model and computer code was conducted and reported in NASA Contractor Report 166096, Review and Verification of CARE 3 Mathematical Model and Code: Interim Report. The study uncovered some implementation errors that were corrected and are reported in this document. The corrected CARE 3 program is called version 4. Thus the document, correction. improvement, and model verification of CARE 3, version 3 was written in April 1984. It is being published now as it has been determined to contain a more accurate representation of CARE 3 than the preceding document of April 1983. This edition supercedes NASA-CR-166122 entitled, 'Correction and Improvement of CARE 3,' version 3, April 1983

Lorentz Violation and Synchrotron Radiation

We consider the radiation emitted by an ultrarelativistic charged particle moving in a magnetic field, in the presence of an additional Lorentz-violating interaction. In contrast with prior work, we treat a form of Lorentz violation that is represented by a renormalizable operator. Neglecting the radiative reaction force, the particle's trajectory can be determined exactly. The resulting orbit is generally noncircular and does not lie in the place perpendicular to the magnetic field. We do not consider any Lorentz violation in the electromagnetic sector, so the radiation from the accelerated charge can be determined by standard means, and the radiation spectrum will exhibit a Lorentz-violating directional dependence. Using data on emission from the Crab nebula, we can set a bound on a particular combination of Lorentz-violating coefficients at the $6\times10^{-20}$ level.Comment: 14 page

Velocity in Lorentz-Violating Fermion Theories

We consider the role of the velocity in Lorentz-violating fermionic quantum theory, especially emphasizing the nonrelativistic regime. Information about the velocity will be important for the kinematical analysis of scattering and other problems. Working within the minimal standard model extension, we derive new expressions for the velocity. We find that generic momentum and spin eigenstates may not have well-defined velocities. We also demonstrate how several different techniques may be used to shed light on different aspects of the problem. A relativistic operator analysis allows us to study the behavior of the Lorentz-violating Zitterbewegung. Alternatively, by studying the time evolution of Gaussian wave packets, we find that there are Lorentz-violating modifications to the wave packet spreading and the spin structure of the wave function.Comment: 24 page

Biodiversity informatics: the challenge of linking data and the role of shared identifiers

A major challenge facing biodiversity informatics is integrating data stored in widely distributed databases. Initial efforts have relied on taxonomic names as the shared identifier linking records in different databases. However, taxonomic names have limitations as identifiers, being neither stable nor globally unique, and the pace of molecular taxonomic and phylogenetic research means that a lot of information in public sequence databases is not linked to formal taxonomic names. This review explores the use of other identifiers, such as specimen codes and GenBank accession numbers, to link otherwise disconnected facts in different databases. The structure of these links can also be exploited using the PageRank algorithm to rank the results of searches on biodiversity databases. The key to rich integration is a commitment to deploy and reuse globally unique, shared identifiers (such as DOIs and LSIDs), and the implementation of services that link those identifiers

HMMER web server: interactive sequence similarity searching

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available only as a computationally intensive UNIX command-line tool, restricting its use. Recent advances in the software, HMMER3, have resulted in a 100-fold speed gain relative to previous versions. It is now feasible to make efficient profile hidden Markov model (profile HMM) searches via the web. A HMMER web server (http://hmmer.janelia.org) has been designed and implemented such that most protein database searches return within a few seconds. Methods are available for searching either a single protein sequence, multiple protein sequence alignment or profile HMM against a target sequence database, and for searching a protein sequence against Pfam. The web server is designed to cater to a range of different user expertise and accepts batch uploading of multiple queries at once. All search methods are also available as RESTful web services, thereby allowing them to be readily integrated as remotely executed tasks in locally scripted workflows. We have focused on minimizing search times and the ability to rapidly display tabular results, regardless of the number of matches found, developing graphical summaries of the search results to provide quick, intuitive appraisement of them