Crystal structures of the human Dysferlin inner DysF domain

Background: Mutations in dysferlin, the first protein linked with the cell membrane repair mechanism, causes a group of muscular dystrophies called dysferlinopathies. Dysferlin is a type two-anchored membrane protein, with a single C terminal trans-membrane helix, and most of the protein lying in cytoplasm. Dysferlin contains several C2 domains and two DysF domains which are nested one inside the other. Many pathogenic point mutations fall in the DysF domain region. Results: We describe the crystal structure of the human dysferlin inner DysF domain with a resolution of 1.9 Angstroms. Most of the pathogenic mutations are part of aromatic/arginine stacks that hold the domain in a folded conformation. The high resolution of the structure show that these interactions are a mixture of parallel ring/guanadinium stacking, perpendicular H bond stacking and aliphatic chain packing. Conclusions: The high resolution structure of the Dysferlin DysF domain gives a template on which to interpret in detail the pathogenic mutations that lead to disease

Antiresonance phase shift in strongly coupled cavity QED

We investigate phase shifts in the strong coupling regime of single-atom cavity quantum electrodynamics (QED). On the light transmitted through the system, we observe a phase shift associated with an antiresonance and show that both its frequency and width depend solely on the atom, despite the strong coupling to the cavity. This shift is optically controllable and reaches 140 degrees - the largest ever reported for a single emitter. Our result offers a new technique for the characterization of complex integrated quantum circuits.Comment: 5 pages, 5 figure

The Robust Network Loading Problem under Hose Demand Uncertainty: Formulation, Polyhedral Analysis, and Computations

Cataloged from PDF version of article.We consider the network loading problem (NLP) under a polyhedral uncertainty description of traffic demands. After giving a compact multicommodity flow formulation of the problem, we state a decomposition property obtained from projecting out the flow variables. This property considerably simplifies the resulting polyhedral analysis and computations by doing away with metric inequalities. Then we focus on a specific choice of the uncertainty description, called the “hose model,” which specifies aggregate traffic upper bounds for selected endpoints of the network. We study the polyhedral aspects of the NLP under hose demand uncertainty and use the results as the basis of an efficient branch-and-cut algorithm. The results of extensive computational experiments on well-known network design instances are reported

A Bose-condensed, simultaneous dual species Mach-Zehnder atom interferometer

This paper presents the first realisation of a simultaneous $^{87}$Rb -$^{85}$Rb Mach-Zehnder atom interferometer with Bose-condensed atoms. A number of ambitious proposals for precise terrestrial and space based tests of the Weak Equivalence Principle rely on such a system. This implementation utilises hybrid magnetic-optical trapping to produce spatially overlapped condensates with a duty cycle of 20s. A horizontal optical waveguide with co-linear Bragg beamsplitters and mirrors is used to simultaneously address both isotopes in the interferometer. We observe a non-linear phase shift on a non-interacting $^{85}$Rb interferometer as a function of interferometer time, $T$, which we show arises from inter-isotope scattering with the co-incident $^{87}$Rb interferometer. A discussion of implications for future experiments is given.Comment: 7 pages, 5 figures. The authors welcome comments and feedback on this manuscrip

Quantum projection noise limited interferometry with coherent atoms in a Ramsey type setup

Every measurement of the population in an uncorrelated ensemble of two-level systems is limited by what is known as the quantum projection noise limit. Here, we present quantum projection noise limited performance of a Ramsey type interferometer using freely propagating coherent atoms. The experimental setup is based on an electro-optic modulator in an inherently stable Sagnac interferometer, optically coupling the two interfering atomic states via a two-photon Raman transition. Going beyond the quantum projection noise limit requires the use of reduced quantum uncertainty (squeezed) states. The experiment described demonstrates atom interferometry at the fundamental noise level and allows the observation of possible squeezing effects in an atom laser, potentially leading to improved sensitivity in atom interferometers.Comment: 8 pages, 8 figures, published in Phys. Rev.

Gradient echo memory in an ultra-high optical depth cold atomic ensemble

Quantum memories are an integral component of quantum repeaters - devices that will allow the extension of quantum key distribution to communication ranges beyond that permissible by passive transmission. A quantum memory for this application needs to be highly efficient and have coherence times approaching a millisecond. Here we report on work towards this goal, with the development of a $^{87}$Rb magneto-optical trap with a peak optical depth of 1000 for the D2 $F=2 \rightarrow F'=3$ transition using spatial and temporal dark spots. With this purpose-built cold atomic ensemble to implement the gradient echo memory (GEM) scheme. Our data shows a memory efficiency of $80\pm 2$% and coherence times up to 195 $\mu$s, which is a factor of four greater than previous GEM experiments implemented in warm vapour cells.Comment: 15 pages, 5 figure

Through Einsteins Eyes

We have developed a relativistically accurate computer graphics code, and have used it to produce photo-realistic images and videos of scenes where special relativistic effects dominate, either in astrophysical contexts or in imaginary worlds where the speed of light is only a few metres per second

A Bright Solitonic Matter-Wave Interferometer

We present the first realisation of a solitonic atom interferometer. A Bose-Einstein condensate of $1\times10^4$ atoms of rubidium-85 is loaded into a horizontal optical waveguide. Through the use of a Feshbach resonance, the $s$-wave scattering length of the $^{85}$Rb atoms is tuned to a small negative value. This attractive atomic interaction then balances the inherent matter-wave dispersion, creating a bright solitonic matter wave. A Mach-Zehnder interferometer is constructed by driving Bragg transitions with the use of an optical lattice co-linear with the waveguide. Matter wave propagation and interferometric fringe visibility are compared across a range of $s$-wave scattering values including repulsive, attractive and non-interacting values. The solitonic matter wave is found to significantly increase fringe visibility even compared with a non-interacting cloud.Comment: 6 pages, 4 figure

Rb-85 tunable-interaction Bose-Einstein condensate machine

We describe our experimental setup for creating stable Bose-Einstein condensates of Rb-85 with tunable interparticle interactions. We use sympathetic cooling with Rb-87 in two stages, initially in a tight Ioffe-Pritchard magnetic trap and subsequently in a weak, large-volume crossed optical dipole trap, using the 155 G Feshbach resonance to manipulate the elastic and inelastic scattering properties of the Rb-85 atoms. Typical Rb-85 condensates contain 4 x 10^4 atoms with a scattering length of a=+200a_0. Our minimalist apparatus is well-suited to experiments on dual-species and spinor Rb condensates, and has several simplifications over the Rb-85 BEC machine at JILA (Papp, 2007; Papp and Wieman, 2006), which we discuss at the end of this article.Comment: 10 pages, 8 figure