Rational design of a (S)-selective-transaminase for asymmetric synthesis of (1S)-1-(1,1′-biphenyl-2-yl)ethanamine

Amine transaminases offer an environmentally sustainable synthesis route for the production of pure chiral amines. However, their catalytic efficiency toward bulky ketone substrates is greatly limited by steric hindrance and therefore presents a great challenge for industrial synthetic applications. We hereby report an example of rational transaminase enzyme design to help alleviate these challenges. Starting from the Vibrio fluvialis amine transaminase that has no detectable catalytic activity toward the bulky aromatic ketone 2-acetylbiphenyl, we employed a rational design strategy combining in silico and in vitro studies to engineer the transaminase enzyme with a minimal number of mutations, achieving an high catalytic activity and high enantioselectivity. We found that, by introducing two mutations W57G/R415A, detectable enzyme activity was achieved. The rationally designed variant, W57F/R88H/V153S/K163F/I259M/R415A/V422A, showed an improvement in reaction rate by more than 1716-fold toward the bulky ketone under study, producing the corresponding enantiomeric pure (S)-amine (enantiomeric excess (ee) value of >99%)

Testing metric-affine f(R)-gravity by relic scalar gravitational waves

We discuss the emergence of scalar gravitational waves in metric-affine f(R)-gravity. Such a component allows to discriminate between metric and metric-affine theories The intrinsic meaning of this result is that the geodesic structure of the theory can be discriminated. We extend the formalism of cross correlation analysis, including the additional polarization mode, and calculate the detectable energy density of the spectrum for cosmological relic gravitons. The possible detection of the signal is discussed against sensitivities of VIRGO, LIGO and LISA interferometers.Comment: 12 pages, 4 figure

Coupled virus - bacteria interactions and ecosystem function in an engineered microbial system

Viruses are thought to control bacterial abundance, affect community composition and influence ecosystem function in natural environments. Yet their dynamics have seldom been studied in engineered systems, or indeed in any system, for long periods of time. We measured virus abundance in a full-scale activated sludge plant every week for two years. Total bacteria and ammonia oxidising bacteria (AOB) abundances, bacterial community profiles, and a suite of environmental and operational parameters were also monitored. Mixed liquor virus abundance fluctuated over an order of magnitude (3.18 × 108 – 3.41 × 109 virus’s mL-1) and that variation was statistically significantly associated with total bacterial and AOB abundance, community composition, and effluent concentrations of COD and NH4+- N and thus system function. This suggests viruses play a far more important role in the dynamics of activated sludge systems than previously realised and could be one of the key factors controlling bacterial abundance, community structure and functional stability and may cause reactors to fail. These finding are based on statistical associations, not mechanistic models. Nevertheless, viral associations with abiotic factors, such as pH, make physical sense giving credence to these findings and highlighting the role that physical factors play in virus ecology. Further work is needed to identify and quantify specific bacteriophage and their hosts to enable us to develop mechanistic models of the ecology of viruses in wastewater treatment systems. However, since we have shown that viruses can be related to effluent quality and virus quantification is simple and cheap, practitioners would probably benefit from quantifying viruses now

Dark energy from conformal symmetry breaking

The breakdown of conformal symmetry in a conformally invariant scalar-tensor gravitational model is revisited in the cosmological context. Although the old scenario of conformal symmetry breaking in cosmology containing scalar field has already been used in many earlier works, it seems that no special attention has been paid for the investigation on the possible connection between the breakdown of conformal symmetry and the existence of dark energy. In this paper, it is shown that the old scenario of conformal symmetry breaking in cosmology, if properly interpreted, not only has a potential ability to describe the origin of dark energy as a symmetry breaking effect, but also may resolve the coincidence problem.Comment: 11 pages, minor revision, published online in EPJ

Quantitative comparison of single- and two-particle properties in the cuprates

We explore the strong variations of the electronic properties of copper-oxygen compounds across the doping phase diagram in a quantitative way. To this end we calculate the electronic Raman response on the basis of results from angle-resolved photoemission spectroscopy (ARPES). In the limits of our approximations we find agreement on the overdoped side and pronounced discrepancies at lower doping. In contrast to the successful approach for the transport properties at low energies, the Raman and the ARPES data cannot be reconciled by adding angle-dependent momentum scattering. We discuss possible routes towards an explanation of the suppression of spectral weight close to the $(\pi,0)$ points which sets in abruptly close to 21% doping.Comment: 7 pages, 4 figure

Graviton production from extra dimensions

Graviton production due to collapsing extra dimensions is studied. The momenta lying in the extra dimensions are taken into account. A $D$-dimensional background is matched to an effectively four-dimensional standard radiation dominated universe. Using observational constraints on the present gravitational wave spectrum, a bound on the maximal temperature at the beginning of the radiation era is derived. This expression depends on the number of extra dimensions, as well as on the $D$-dimensional Planck mass. Furthermore, it is found that the extra dimensions have to be large.Comment: LaTeX file, 14 pages, 4 figure

Selectivity and functional diversity in arbuscular mycorrhizas of co-occurring fungi and plants from a temperate deciduous woodland

1 The arbuscular mycorrhizal (AM) fungi colonizing plants at a woodland site in North Yorkshire (UK) have been characterized from the roots of five plant species (Rubus fruticosus agg. L., Epilobium angustifolium L., Acer pseudoplatanus L., Ajuga reptans L. and Glechoma hederacea L.), and identified using small-subunit rRNA (SSUrRNA) gene amplification and sequencing. 2 Interactions between five plant species from the site and four co-occurring glomalean fungi were investigated in artificial one-to-one AM symbioses. Three of the fungi were isolated from the site; the fourth was a culture genetically similar to a taxon found at the site. Phosphorus uptake and growth responses were compared with non-mycorrhizal controls. 3 Individual fungi colonized each plant with different spatial distribution and intensity. Some did not colonize at all, indicating incompatibility under the conditions used in the experiments. 4 Glomus hoi consistently occupied a large proportion of root systems and outperformed the other fungi, improving P uptake and enhancing the growth of four out of the five plant species. Only G. hoi colonized and increased P uptake in Acer pseudoplatanus, the host plant with which it associates almost exclusively under field conditions. Colonization of all plant species by Scutellospora dipurpurescens was sparse, and beneficial to only one of the host plants (Teucrium scorodonia). Archaeospora trappei and Glomus sp. UY1225 had variable effects on the host plants, conferring a range of P uptake and growth benefits on Lysimachia nummularia and T. scorodonia, increasing P uptake whilst not affecting biomass in Ajuga reptans and Glechoma hederacea, and failing to form mycorrhizas with A. pseudoplatanus. 5 These experimental mycorrhizas show that root colonization, symbiont compatibility and plant performance vary with each fungus-plant combination, even when the plants and fungi naturally co-exist. 6 We provide evidence of physical and functional selectivity in AM. The small number of described AM fungal species (154) has been ascribed to their supposed lack of host specificity, but if the selectivity we have observed is the general rule, then we may predict that many more, probably hard-to-culture glomalean species await discovery, or that members of species as currently perceived may be physiologically or functionally distinct

Cosmic Acceleration in Brans-Dicke Cosmology

We consider Brans-Dicke theory with a self-interacting potential in Einstein conformal frame. We show that an accelerating expansion is possible in a spatially flat universe for large values of the Brans-Dicke parameter consistent with local gravity experiments.Comment: 10 Pages, 3 figures, To appear in General Relativity and Gravitatio

f(R)f(R) gravity constrained by PPN parameters and stochastic background of gravitational waves

We analyze seven different viable $f(R)$-gravities towards the Solar System tests and stochastic gravitational waves background. The aim is to achieve experimental bounds for the theory at local and cosmological scales in order to select models capable of addressing the accelerating cosmological expansion without cosmological constant but evading the weak field constraints. Beside large scale structure and galactic dynamics, these bounds can be considered complimentary in order to select self-consistent theories of gravity working at the infrared limit. It is demonstrated that seven viable $f(R)$-gravities under consideration not only satisfy the local tests, but additionally, pass the above PPN-and stochastic gravitational waves bounds for large classes of parameters.Comment: 23 pages, 8 figure

Enhancement of the upper critical field by nonmagnetic impurities in dirty two-gap superconductors

Quasiclassic Uzadel equations for two-band superconductors in the dirty limit with the account of both intraband and interband scattering by nonmagnetic impurities are derived for any anisotropic Fermi surface. From these equations the Ginzburg-Landau equations, and the critical temperature $T_c$ are obtained. An equation for the upper critical field, which determines both the temperature dependence of $H_{c2}(T)$ and the orientational dependence of $H_{c2}(\theta)$ as a function of the angle $\theta$ between ${\bf H}$ and the c-axis is obtained. It is shown that the shape of the $H_{c2}(T)$ curve essentially depends on the ratio of the intraband electron diffusivities $D_1$ and $D_1$, and can be very different from the standard one-gap dirty limit theory. In particular, the value $H_{c2}(0)$ can considerably exceed $0.7T_cdH_{c2}/dT_c$, which can have important consequences for applications of $MgB_2$. A scaling relation is proposed which enables one to obtain the angular dependence of $H_{c2}(\theta)$ from the equation for $H_{c2}$ at ${\bf H}\| c$. It is shown that, depending on the relation between $D_1$ and $D_2$, the ratio of the upper critical field $H_{c2}^\|/H_{c2}^\perp$ for ${\bf H}\| ab$ and ${\bf H}\perp ab$ can both increase and decrease as the temperature decreases. Implications of the obtained results for $MgB_2$ are discussed