Integration of navigation and action selection functionalities in a computational model of cortico-basal ganglia-thalamo-cortical loops

This article describes a biomimetic control architecture affording an animat both action selection and navigation functionalities. It satisfies the survival constraint of an artificial metabolism and supports several complementary navigation strategies. It builds upon an action selection model based on the basal ganglia of the vertebrate brain, using two interconnected cortico-basal ganglia-thalamo-cortical loops: a ventral one concerned with appetitive actions and a dorsal one dedicated to consummatory actions. The performances of the resulting model are evaluated in simulation. The experiments assess the prolonged survival permitted by the use of high level navigation strategies and the complementarity of navigation strategies in dynamic environments. The correctness of the behavioral choices in situations of antagonistic or synergetic internal states are also tested. Finally, the modelling choices are discussed with regard to their biomimetic plausibility, while the experimental results are estimated in terms of animat adaptivity

On the plasma quasi-thermal noise in the outer heliosphere

The recent paper by Li et al. on electron quasi-thermal noise in the outer heliosphere is flawed. It assumes the plasma drift speed to be much smaller than the electron thermal speed, even though both quantities are of the same order of magnitude in the outer heliosphere inward of the termination shock, because of the low plasma temperature. In this case, the Langmuir wave dispersion equation and the quasi-thermal noise in the antenna frame are completely changed. Furthermore, these calculations neglect the shot noise, which should produce a large contribution below the plasma frequency with the Voyager antennas in the outer heliosphere.Comment: Accepted as Research Note of the AAS (18/03/2024

Raman-modes of index-identified free-standing single-walled carbon nanotubes

Using electron diffraction on free-standing single-walled carbon nanotubes we have determined the structural indices (n,m) of tubes in the diameter range from 1.4 to 3nm. On the same free-standing tubes we have recorded Raman spectra of the tangential modes and the radial breathing mode. For the smaller diameters (1.4-1.7nm) these measurements confirm previously established radial breathing mode frequency versus diameter relations, and would be consistent with the theoretically predicted proportionality to the inverse diameter. However, for extending the relation to larger diameters, either a yet unexplained environmental constant has to be assumed, or the linear relation has to be abandoned.Comment: 4 pages, 4 figures, +additional materials (select PostScript to obtain it

An endoplasmic reticulum (ER)-directed fusion protein comprising a bacterial subtilisin domain and the human cytokine interleukin 6 is efficiently cleaved in planta

A major limitation of plant bioreactors is the lack of suitable and cost-effective purification methods for the extraction of pharmaceutical-grade proteins. In contrast to that, there are numerous established purification systems for heterologous proteins, expressed in Escherichia coli, which are used for the commercial production of therapeutic proteins. Therefore, we wanted to adapt the BioRad Profinity eXact<sup>TM</sup> one-step protein purification system (originally designed for microbial expression platforms) to purify recombinant proteins in crude plant extracts. This system based on the prodomain of microbial subtilase as fusion partner and a column-bound subtilisin protease. The engineered protease captures and cleaves the fusion protein, retaining the tag and releasing the native protein into the eluate. The subtilase tag was fused to human interleukin 6 (IL6) and transiently expressed in Nicotiana benthamiana leaves using the MagnICON system. The fusion protein was expressed at lower levels than native IL6, suggesting it is expressed less efficiently and/or has a lower stability. However, free IL6 was also detected in the extract and was unaffected by the addition of protease inhibitors during extraction, suggesting that the fusion protein is cleaved in planta by endogenous proteases. Purification of the recombinant protein using the Profinity eXact<sup>TM</sup> system reduced the yield still further. The inefficient production of tagged IL6, coupled with the extensive losses during purification, indicate that the Profinity eXact<sup>TM</sup> system is not suitable for the extraction of IL6 from crude plant extracts.Keywords: Tobacco, transient expression, endoplasmic reticulum, Profinity protein purification, partial cleavageAfrican Journal of Biotechnology Vol. 12(3), pp. 311-31

PennyLane: Automatic differentiation of hybrid quantum-classical computations

PennyLane is a Python 3 software framework for optimization and machine learning of quantum and hybrid quantum-classical computations. The library provides a unified architecture for near-term quantum computing devices, supporting both qubit and continuous-variable paradigms. PennyLane's core feature is the ability to compute gradients of variational quantum circuits in a way that is compatible with classical techniques such as backpropagation. PennyLane thus extends the automatic differentiation algorithms common in optimization and machine learning to include quantum and hybrid computations. A plugin system makes the framework compatible with any gate-based quantum simulator or hardware. We provide plugins for Strawberry Fields, Rigetti Forest, Qiskit, Cirq, and ProjectQ, allowing PennyLane optimizations to be run on publicly accessible quantum devices provided by Rigetti and IBM Q. On the classical front, PennyLane interfaces with accelerated machine learning libraries such as TensorFlow, PyTorch, and autograd. PennyLane can be used for the optimization of variational quantum eigensolvers, quantum approximate optimization, quantum machine learning models, and many other applications.Comment: Code available at https://github.com/XanaduAI/pennylane/ . Significant contributions to the code (new features, new plugins, etc.) will be recognized by the opportunity to be a co-author on this pape

Anatomic site-specific patterns of gene copy number gains in skin, mucosal, and uveal melanomas detected by fluorescence in situ hybridization

To assess the differences between melanomas of different location and different etiology, 372 malignant melanomas were brought in a tissue microarray format. The collection included 23 acral and 118 non-acral skin melanomas, 9 mucosal melanomas, 100 uveal melanomas, and 122 melanoma metastases. Fluorescence in situ hybridization (FISH) was used to assess copy number changes of the cyclin D1 (CCND1), MDM2, c-myc (MYC), and HER2 genes. FISH analysis revealed distinct differences between melanomas from different locations. CCND1 amplifications were detected in skin melanomas from sites with chronic sun exposure (6 of 32 cases), acral melanomas (4 of 17 cases), and mucosal melanomas (one of ten cases) but not in uveal melanomas. High-level MDM2 amplifications were exclusively present in acral melanomas (2 of 19 cases). MYC copy number gains were detected in 32 of 71 uveal melanomas, five of eight mucosal melanomas, and 6 of 67 melanomas from sites with intermittent sun exposure but not in acral melanomas nor melanomas from sites with chronic sun exposure. Alterations of the MYC gene were associated with advanced tumor stage. There were no high-level HER2 amplifications. Site-specific genetic and epigenetic features may impact the response of melanomas to various anti-cancer drugs and should be considered in future studies on the molecular pathogenesis of malignant melanoma

Automated NanoSIMS Measurements of Spinel Stardust from the Murray Meteorite

We report new O isotopic data on 41 presolar oxide grains, 38 MgAl2O4 (spinel) and 3 Al2O3 from the CM2 meteorite Murray, identified with a recently developed automated measurement system for the NanoSIMS. We have also obtained Mg-Al isotopic results on 29 of the same grains (26 spinel and 3 Al2O3). The majority of the grains have O isotopic compositions typical of most presolar oxides, fall well into the four previously defined groups, and are most likely condensates from either red giant branch or asymptotic giant branch stars. We have also discovered several grains with more unusual O and Mg compositions suggesting formation in extreme astrophysical environments, such as novae and supernovae. One of these grains has massive enrichments in 17O, 25Mg, and 26Mg, which are isotopic signatures indicative of condensation from nova ejecta. Two grains of supernova origin were also discovered: one has a large 18O/16O ratio typical of Group 4 presolar oxides; another grain is substantially enriched in 16O, and also contains radiogenic 44Ca from the decay of 44Ti, a likely condensate from material originating in the O-rich inner zones of a Type II supernova. In addition, several Group 2 presolar spinel grains also have large 25Mg and 26Mg isotopic anomalies that are difficult to explain by standard nucleosynthesis in low-mass stars. Auger elemental spectral analyses were performed on the grains and qualitatively suggest that presolar spinel may not have higher-than- stoichiometric Al/Mg ratios, in contrast to SIMS results obtained here and reported previously.Comment: 58 pages, 10 figures, 1 table, published in Ap