Reduction of trimethylamine N-oxide to trimethylamine by the human gut microbiota: supporting evidence for ‘metabolic retroversion’

Dietary sources of methylamines such as choline, trimethylamine (TMA), trimethylamine N-oxide (TMAO), phosphatidylcholine (PC) and carnitine are present in a number of foodstuffs, including meat, fish, nuts and eggs. It is recognized that the gut microbiota is able to convert choline to TMA in a fermentation-like process. Similarly, PC and carnitine are converted to TMA by the gut microbiota. It has been suggested that TMAO is subject to ‘metabolic retroversion’ in the gut (i.e. it is reduced to TMA by the gut microbiota, with this TMA being oxidized to produce TMAO in the liver). Sixty-six strains of human faecal and caecal bacteria were screened on solid and liquid media for their ability to utilize trimethylamine N-oxide (TMAO), with metabolites in spent media profiled by Proton Nuclear Magnetic Resonance (1H NMR) spectroscopy. Enterobacteriaceae produced mostly TMA from TMAO, with caecal/small intestinal isolates of Escherichia coli producing more TMA than their faecal counterparts. Lactic acid bacteria (enterococci, streptococci, bifidobacteria) produced increased amounts of lactate when grown in the presence of TMAO, but did not produce large amounts of TMA from TMAO. The presence of TMAO in media increased the growth rate of Enterobacteriaceae; while it did not affect the growth rate of lactic acid bacteria, TMAO increased the biomass of these bacteria. The positive influence of TMAO on Enterobacteriaceae was confirmed in anaerobic, stirred, pH-controlled batch culture fermentation systems inoculated with human faeces, where this was the only bacterial population whose growth was significantly stimulated by the presence of TMAO in the medium. We hypothesize that dietary TMAO is used as an alternative electron acceptor by the gut microbiota in the small intestine/proximal colon, and contributes to microbial population dynamics upon its utilization and retroversion to TMA, prior to absorption and secondary conversion to TMAO by hepatic flavin-containing monooxygenases. Our findings support the idea that oral TMAO supplementation is a physiologically-stable microbiota-mediated strategy to deliver TMA at the gut barrier

Global change effects on plant communities are magnified by time and the number of global change factors imposed

Global change drivers (GCDs) are expected to alter community structure and consequently, the services that ecosystems provide. Yet, few experimental investigations have examined effects of GCDs on plant community structure across multiple ecosystem types, and those that do exist present conflicting patterns. In an unprecedented global synthesis of over 100 experiments that manipulated factors linked to GCDs, we show that herbaceous plant community responses depend on experimental manipulation length and number of factors manipulated. We found that plant communities are fairly resistant to experimentally manipulated GCDs in the short term (\u3c 10 y). In contrast, long-term (\u3e= 10 y) experiments show increasing community divergence of treatments from control conditions. Surprisingly, these community responses occurred with similar frequency across the GCD types manipulated in our database. However, community responses were more common when 3 or more GCDs were simultaneously manipulated, suggesting the emergence of additive or synergistic effects of multiple drivers, particularly over long time periods. In half of the cases, GCD manipulations caused a difference in community composition without a corresponding species richness difference, indicating that species reordering or replacement is an important mechanism of community responses to GCDs and should be given greater consideration when examining consequences of GCDs for the biodiversity-ecosystem function relationship. Human activities are currently driving unparalleled global changes worldwide. Our analyses provide the most comprehensive evidence to date that these human activities may have widespread impacts on plant community composition globally, which will increase in frequency over time and be greater in areas where communities face multiple GCDs simultaneously

The importance of food systems and the environment for nutrition.

Global and local food system transformation is necessary in order to ensure the delivery of healthy, safe, and nutritious foods in both sustainable and equitable ways. Food systems are complex entities that affect diets, human health, and a range of other outcomes including economic growth, natural resource and environmental resiliency, and sociocultural factors. However, food systems contribute to and are vulnerable to ongoing climate and environmental changes that threaten their sustainability. Although there has been increased focus on this topic in recent years, many gaps in our knowledge persist on the relation between environmental factors, food systems, and nutritional outcomes. In this article, we summarize this emerging field and describe what innovative nutrition research is needed in order to bring about food policy changes in the era of climate disruption and environmental degradation

Ground scintillometric investigations of parts of Kerri-Kerri formation, south – west Gombe, north - eastern Nigeria

A ground scintillometric survey was carried out in the south - western part of the Kerri - Kerri Formation to identify areas of more prominent radioactive anomalies for further detailed spectrometric investigation. The total count rates recorded were generally higher in the south – western part of the study area. Analysis of the reduced data reveals the threshold activity value for the study area is 27.5 cps. Activities of more than twice the mode that will be of significance in terms of mineralization is 40 cps observed in the area north east of Tumu village with occurrence of granitic feldspar. The cosmic ray contribution to the ground activity measured in the field and used for the background correction is 4 cps. Detailed ground spectrometric investigation should be carried out in the area north – east of Tumu village to determine the radiometric mineralization potentials of the area and confirm if the radiation is due to the rocks or soil of the area.KEYWORDS: Scintillometric, Total count rates, Background correction, Threshold activity, Mineralization

Pyroclastic density currents (PDC) of the 16-17 August 2006 eruptions of Tungurahua volcano, Ecuador: Geophysical registry and characteristics

Tungurahua, located in the Eastern Cordillera of the Ecuadorian Andes, is a 5023 m-high active volcano, notable for its extreme relief (3200 m), steep sides, and frequent eruptive cycles. From 1999 until 2006 Tungurahua experienced short periods of low to moderate strombolian activity, characterized by fire fountaining, explosions, frequent ash falls and debris flows, and no PDC events. Without warning, Tungurahua initiated PDC activity on 15–16 July 2006, which became more intense on the night of 16–17 August 2006, which is the focus of this study. Continuous monitoring of Tungurahua has employed seismic (both short period and broadband (BB) instruments), SO2 gas emission (COSPEC and DOAS), and geodetic methods (EDM, tilt meters, and GPS), in addition to thermal imagery (airborne and ground-based). Acoustic flow monitors (AFM) installed to monitor lahar activity were important for detecting PDC events. Acoustic signals were monitored at Riobamba, 40 km to the SW, as well as by infrasound sensors at Tungurahua's BB seismic stations. Based on geophysical parameters, visual observations, and PDC deposit characteristics, four phases of distinct eruptive activity are recognized during the 16–17 August episode. Phase I (08H37 to 21H13 of 16 Aug.) (local time) experienced low to moderate strombolian activity with occasional high energy impulsive bursts and small PDC. Phase II (21H13-16 Aug. to 00H12-17 Aug.) was characterized by a number of discrete events with high amplitude seismo-acoustic signals, followed by the generation of larger PDC that overran monitoring stations and had velocities of 30–33 m/s. After midnight, Phase III (00H12 to 01H14) saw an intense period of unrelenting eruptive activity corresponding to the episode's greatest energy release. It was characterized by subplinian activity accompanied by a series of high energy outbursts and constant low frequency jetting that together formed a continuous plume. It was during this phase that the largest PDC were produced, reaching the surrounding river valleys. Phase IV (after 01H14) followed the cessation of the paroxysmal eruption, but witnessed many granular PDC generated by degassed lava spill outs from the crater that developed lobe and channel morphology on the cone's lower flanks. Hours later a blocky lava flow issued from the crater. During these episodes, more than 30 PDC events were detected, the majority being small flows that remained high on the cone. The two largest PDC occurred after midnight, probably generated by fountain collapse. Their descent down the cone's upper steep flanks (~ 28°) and 2.4 km in length favored air entrainment, resulting in PDC with greater fluidity. These flows had volumes of 9 to 17 × 106 m3 and produced widespread, but relatively thin (1–2 m thick) normally-graded deposits at their distal ends. The character and evolution of the PDC activity apparently reflect decreasing volatile contents of the magma and a diminishing magma supply

A clinician’s guide to management of intra-abdominal hypertension and abdominal compartment syndrome in critically ill patients

This article is one of ten reviews selected from the Annual Update in Intensive Care and Emergency Medicine 2020. Other selected articles can be found online at . Further information about the Annual Update in Intensive Care and Emergency Medicine is available from http://www.springer.com/series/8901

Managing marine disease emergencies in an era of rapid change

Infectious marine diseases can decimate populations and are increasing among some taxa due to global change and our increasing reliance on marine environments. Marine diseases become emergencies when significant ecological, economic or social impacts occur. We can prepare for and manage these emergencies through improved surveillance, and the development and iterative refinement of approaches to mitigate disease and its impacts. Improving surveillance requires fast, accurate diagnoses, forecasting disease risk and real-time monitoring of disease-promoting environmental conditions. Diversifying impact mitigation involves increasing host resilience to disease, reducing pathogen abundance and managing environmental factors that facilitate disease. Disease surveillance and mitigation can be adaptive if informed by research advances and catalysed by communication among observers, researchers and decision-makers using information-sharing platforms. Recent increases in the awareness of the threats posed by marine diseases may lead to policy frameworks that facilitate the responses and management that marine disease emergencies require

Fast Locality-Sensitive Hashing Frameworks for Approximate Near Neighbor Search

The Indyk-Motwani Locality-Sensitive Hashing (LSH) framework (STOC 1998) is a general technique for constructing a data structure to answer approximate near neighbor queries by using a distribution $\mathcal{H}$ over locality-sensitive hash functions that partition space. For a collection of $n$ points, after preprocessing, the query time is dominated by $O(n^{\rho} \log n)$ evaluations of hash functions from $\mathcal{H}$ and $O(n^{\rho})$ hash table lookups and distance computations where $\rho \in (0,1)$ is determined by the locality-sensitivity properties of $\mathcal{H}$. It follows from a recent result by Dahlgaard et al. (FOCS 2017) that the number of locality-sensitive hash functions can be reduced to $O(\log^2 n)$, leaving the query time to be dominated by $O(n^{\rho})$ distance computations and $O(n^{\rho} \log n)$ additional word-RAM operations. We state this result as a general framework and provide a simpler analysis showing that the number of lookups and distance computations closely match the Indyk-Motwani framework, making it a viable replacement in practice. Using ideas from another locality-sensitive hashing framework by Andoni and Indyk (SODA 2006) we are able to reduce the number of additional word-RAM operations to $O(n^\rho)$.Comment: 15 pages, 3 figure