Confirmation of circumstellar phosphine

Phosphine (PH3) was tentatively identified a few years ago in the carbon star envelopes IRC+10216 and CRL2688 from observations of an emission line at 266.9 GHz attributable to the J=1-0 rotational transition. We report the detection of the J=2-1 rotational transition of PH3 in IRC+10216 using the HIFI instrument on board Herschel, which definitively confirms the identification of PH3. Radiative transfer calculations indicate that infrared pumping to excited vibrational states plays an important role in the excitation of PH3 in the envelope of IRC+10216, and that the observed lines are consistent with phosphine being formed anywhere between the star and 100 R* from the star, with an abundance of 1e-8 relative to H2. The detection of PH3 challenges chemical models, none of which offers a satisfactory formation scenario. Although PH3 locks just 2 % of the total available phosphorus in IRC+10216, it is together with HCP, one of the major gas phase carriers of phosphorus in the inner circumstellar layers, suggesting that it could be also an important phosphorus species in other astronomical environments. This is the first unambiguous detection of PH3 outside the solar system, and a further step towards a better understanding of the chemistry of phosphorus in space.Comment: Accepted for publication in ApJ Letter

Constraints on the H2O formation mechanism in the wind of carbon-rich AGB stars

Context. The recent detection of warm H$_2$O vapor emission from the outflows of carbon-rich asymptotic giant branch (AGB) stars challenges the current understanding of circumstellar chemistry. Two mechanisms have been invoked to explain warm H$_2$O vapor formation. In the first, periodic shocks passing through the medium immediately above the stellar surface lead to H$_2$O formation. In the second, penetration of ultraviolet interstellar radiation through a clumpy circumstellar medium leads to the formation of H$_2$O molecules in the intermediate wind. Aims. We aim to determine the properties of H$_2$O emission for a sample of 18 carbon-rich AGB stars and subsequently constrain which of the above mechanisms provides the most likely warm H$_2$O formation pathway. Methods, Results, and Conclusions. See paper

Discovery of SiCSi in IRC+10216: A missing link between gas and dust carriers of SiC bonds

We report the discovery in space of a disilicon species, SiCSi, from observations between 80 and 350 GHz with the IRAM 30m radio telescope. Owing to the close coordination between laboratory experiments and astrophysics, 112 lines have now been detected in the carbon-rich star CWLeo. The derived frequencies yield improved rotational and centrifugal distortion constants up to sixth order. From the line profiles and interferometric maps with the Submillimeter Array, the bulk of the SiCSi emis- sion arises from a region of 6 arcseconds in radius. The derived abundance is comparable to that of SiC2. As expected from chemical equilibrium calculations, SiCSi and SiC2 are the most abundant species harboring a SiC bond in the dust formation zone and certainly both play a key role in the formation of SiC dust grains.Comment: To be published in the Astrophysical Journal Letters; Accepted May 6 201

Discovery of the acetyl cation, CH3CO+, in space and in the laboratory

Using the Yebes 40m and IRAM 30m radiotelescopes, we detected two series of harmonically related lines in space that can be fitted to a symmetric rotor. The lines have been seen towards the cold dense cores TMC-1, L483, L1527, and L1544. High level of theory ab initio calculations indicate that the best possible candidate is the acetyl cation, CH3CO+, which is the most stable product resulting from the protonation of ketene. We have produced this species in the laboratory and observed its rotational transitions Ju = 10 up to Ju = 27. Hence, we report the discovery of CH3CO+ in space based on our observations, theoretical calculations, and laboratory experiments. The derived rotational and distortion constants allow us to predict the spectrum of CH3CO+ with high accuracy up to 500 GHz. We derive an abundance ratio N(H2CCO)/N(CH3CO+) = 44. The high abundance of the protonated form of H2CCO is due to the high proton affinity of the neutral species. The other isomer, H2CCOH+, is found to be 178.9 kJ/mol above CH3CO+. The observed intensity ratio between the K=0 and K=1 lines, 2.2, strongly suggests that the A and E symmetry states have suffered interconversion processes due to collisions with H and/or H2, or during their formation through the reaction of H3+ with H2CCO.Comment: Accepted for publication in A&A Letter

Time Variability of Molecular Line Emission in IRC+10216

We present the results of monitoring the molecular emission of the C-rich AGB star IRC+10216 over 3 years with the Herschel Space Observatory. Observations of rotational transitions of various vibrational levels of CO, 13CO, CS, CCH, H2O, SiO, SiS, SiC2, HCN and HNC have been collected with the HIFI, PACS and SPIRE instruments over multiple epochs. The intensity monitoring shows strong and periodic variations of most of the observed molecules, often with differential behavior depending on the transition level (larger variation at higher J), and generally enhanced modulations in the vibrational modes of some of these molecules (e.g. HCN). These results show that the effect of IR pumping through the different vibrational levels on the emergent line profiles of a given transition can be really significant. This implies that the IR radiation field of the circumstellar envelope and its time variation has to be taken into account in any radiative transfer model in order to derive accurately the physico-chemical structure of the envelope

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Adeno-associated virus (AAV) is a small single-stranded DNA virus that requires the presence of a helper virus, such as adenovirus or herpes virus, to efficiently replicate its genome. AAV DNA is replicated by a rolling-hairpin mechanism (Ward, 2006), and during replication several DNA intermediates can be detected. This detailed protocol describes how to analyze the AAV DNA intermediates formed during AAV replication using a modified Hirt extract (Hirt, 1967) procedure and Southern blotting (Southern, 1975)

On the physical structure of IRC+10216 Ground-based and Herschel observations of CO and C2H

Context. The carbon-rich asymptotic giant branch star IRC +10 216 undergoes strong mass loss, and quasi-periodic enhancements of the density of the circumstellar matter have previously been reported. The star’s circumstellar environment is a well-studied and complex astrochemical laboratory, in which many molecular species have been proved to be present. CO is ubiquitous in the circumstellar envelope, while emission from the ethynyl (C2H) radical is detected in a spatially confined shell around IRC +10 216. We recently detected unexpectedly strong emission from the N = 4−3,   6−5,   7−6,   8−7, and 9−8 transitions of C2H with the IRAM 30 m telescope and with Herschel/HIFI, which challenges the available chemical and physical models. Aims. We aim to constrain the physical properties of the circumstellar envelope of IRC +10 216, including the effect of episodic mass loss on the observed emission lines. In particular, we aim to determine the excitation region and conditions of C2H to explain the recent detections and to reconcile them with interferometric maps of the N = 1−0 transition of C2H. Methods. Using radiative-transfer modelling, we provide a physical description of the circumstellar envelope of IRC +10 216, constrained by the spectral-energy distribution and a sample of 20 high-resolution and 29 low-resolution CO lines – to date, the largest modelled range of CO lines towards an evolved star. We furthermore present the most detailed radiative-transfer analysis of C2H that has been done so far. Results. Assuming a distance of 150 pc to IRC +10 216, the spectral-energy distribution was modelled with a stellar luminosity of 11300 L⊙ and a dust-mass-loss rate of 4.0 × 10-8   M⊙ yr-1. Based on the analysis of the 20 high-frequency-resolution CO observations, an average gas-mass-loss rate for the last 1000 years of 1.5 × 10-5 M⊙ yr-1 was derived. This results in a gas-to-dust-mass ratio of 375, typical for this type of star. The kinetic temperature throughout the circumstellar envelope is characterised by three power laws: Tkin(r) ∝ r-0.58 for radii r ≤ 9 stellar radii, Tkin(r) ∝ r-0.40 for radii 9 ≤ r ≤ 65 stellar radii, and Tkin(r) ∝ r-1.20 for radii r ≥ 65 stellar radii. This model successfully describes all 49 observed CO lines. We also show the effect of density enhancements in the wind of IRC +10 216 on the C2H-abundance profile, and the close agreement we find of the model predictions with interferometric maps of the C2H N = 1−0 transition and with the rotational lines observed with the IRAM 30 m telescope and Herschel/HIFI. We report on the importance of radiative pumping to the vibrationally excited levels of C2H and the significant effect this pumping mechanism has on the excitation of all levels of the C2H-molecule

Genetic variability in CYP3A4 and CYP3A5 in primary liver, gastric and colorectal cancer patients

<p>Abstract</p> <p>Background</p> <p>Drug-metabolizing enzymes play a role in chemical carcinogenesis through enzymatic activation of procarcinogens to biologically reactive metabolites. The role of gene polymorphisms of several cytochrome P450 enzymes in digestive cancer risk has been extensively investigated. However, the drug-metabolizing enzymes with the broader substrate specificity, CYP3A4 and CYP3A5, have not been analyzed so far. This study aims to examine associations between common CYP3A4 and CYP3A5 polymorphisms and digestive cancer risk.</p> <p>Methods</p> <p>CYP3A4 and CYP3A5 genotypes were determined in 574 individuals including 178 patients with primary liver cancer, 82 patients with gastric cancer, 151 patients with colorectal cancer, and 163 healthy individuals.</p> <p>Results</p> <p>The variant allele frequencies for patients with liver cancer, gastric cancer, colorectal cancer and healthy controls, respectively, were: <it>CYP3A4*1B</it>, 4.8 % (95% C.I. 2.6–7.0), 3.7 % (0.8–6.6) 4.3% (2.0–6.6) and 4.3% (2.1–6.5); <it>CYP3A5*3</it>, 91.8 % (93.0–97.4), 95.7% (92.6–98.8), 91.7% (88.6–94.8) and 90.8% (87.7–93.9). The association between <it>CYP3A4*1B </it>and <it>CYP3A5*3 </it>variant alleles did not significantly differ among patients and controls. No differences in genotypes, allele frequencies, or association between variant alleles were observed with regard to gender, age at diagnosis, tumour site or stage.</p> <p>Conclusion</p> <p>Common polymorphisms on <it>CYP3A4 </it>and <it>CYP3A5 </it>genes do not modify the risk of developing digestive cancers in Western Europe.</p