Detecting nutrient deficiency in plant systems using synchrotron Fourier-transform infrared microspectroscopy

By 2050, it is estimated that the global population will have surpassed 9 billion people, presenting a significant challenge with regards to food security. In order to provide sufficient quantities of nutritious food in the future, it is necessary to improve agricultural productivity by up to 70%. Nutrient deficiencies are one particular threat to food security that can have a negative impact on crop yield and quality. Currently the standard agricultural approach to prevention is to supply an excess macronutrient fertiliser, such as nitrate or phosphate, during crop production. However, the efficiency of this approach is poor as deficiencies of specific nutrients, such as Ca, are not prevented in this circumstance, and fertiliser use is associated with a host of adverse environmental impacts. Herein, we describe a novel method to detect Ca deficiency using synchrotron radiation-based Fourier-transform infrared (FTIR) microspectroscopy in live and fixed tissue of the model plant Commelina communis, as a precursor to targeted nutrient remediation in the field

Antisense oligonucleotide induced exon skipping and the dystrophin gene transcript: cocktails and chemistries

<p>Abstract</p> <p>Background</p> <p>Antisense oligonucleotides (AOs) can interfere with exon recognition and intron removal during pre-mRNA processing, and induce excision of a targeted exon from the mature gene transcript. AOs have been used <it>in vitro </it>and <it>in vivo </it>to redirect dystrophin pre-mRNA processing in human and animal cells. Targeted exon skipping of selected exons in the dystrophin gene transcript can remove nonsense or frame-shifting mutations that would otherwise have lead to Duchenne Muscular Dystrophy, the most common childhood form of muscle wasting.</p> <p>Results</p> <p>Although many dystrophin exons can be excised using a single AO, several exons require two motifs to be masked for efficient or specific exon skipping. Some AOs were inactive when applied individually, yet pronounced exon excision was induced in transfected cells when the AOs were used in select combinations, clearly indicating synergistic rather than cumulative effects on splicing. The necessity for AO cocktails to induce efficient exon removal was observed with 2 different chemistries, 2'-O-methyl modified bases on a phosphorothioate backbone and phosphorodiamidate morpholino oligomers. Similarly, other trends in exon skipping, as a consequence of 2'-O-methyl AO action, such as removal of additional flanking exons or variations in exon skipping efficiency with overlapping AOs, were also seen when the corresponding sequences were prepared as phosphorodiamidate morpholino oligomers.</p> <p>Conclusion</p> <p>The combination of 2 AOs, directed at appropriate motifs in target exons was found to induce very efficient targeted exon skipping during processing of the dystrophin pre-mRNA. This combinatorial effect is clearly synergistic and is not influenced by the chemistry of the AOs used to induce exon excision. A hierarchy in exon skipping efficiency, observed with overlapping AOs composed of 2'-O-methyl modified bases, was also observed when these same sequences were evaluated as phosphorodiamidate morpholino oligomers, indicating design parameters established with one chemistry may be applied to the other.</p

Ariel - Volume 9 Number 5

Executive Editor Seth B. Paul Associate Editor Warren J. Ventriglia Business Manager Fredric Jay Matlin University News John Patrick Welch World News George Robert Coar Editorials Editor Steve Levine Features Mark Rubin Brad Feldstein Sports Editor Eli Saleeby Photo Editor Ken Buckwalter Circulation Victor Onufreiczuk Lee Wugofski Graphics and Art Steve Hulkower Commons Editor Brenda Peterso

Cow/Calf Production Record Software.

16 p

The Grizzly, February 27, 1987

Depts., Dean, Court New Faculty Free Agent Team • No Busts, But Bummer Booze Bar Dims Lorelei • Grizzly Poll Points Couple to Final Home • Letters: Impossible Crossings?; Adoption Instead of Abortion; Plea for Soviet Jewry • Ecoliers de Francais: Fly to France Pour Parler • Treasuring Modern Art Takes Time ... And Protest • Men\u27s B-Ball Sponsors Art Auction • Fencing Alive at Ursinus • Bears, 20-3, Looking for Fourth or Better at MAC • Swimmers to Celebrate Wins With Skins • Women Runners Capture MAC Title • Men\u27s Track Runs Third at MAC\u27s • Swimmin\u27 Women Go to MAC\u27s • Notes: Meistersingers\u27 50th Tour; Chambliss Family Lecture; Upcoming Forum Scheduled • Bear Dave Durst Dominates Entering MAC Tourney • Migliore Caps Nine-Letter Career with Athlete of the Week Honors • Two U.C. Gymnasts Go to Nat\u27ls • Robert Cray Band\u27s Strong Persuader Receives a B plushttps://digitalcommons.ursinus.edu/grizzlynews/1183/thumbnail.jp

The Grizzly, April 24, 1987

Professor: One of Eighty Arrested for Protest • Forum Series Ends • Spring Weekend Lacks Enthusiasm • Admissions Expands to New Areas • Letters: Room Selection Process Attacked; Another Attack; Apology; And a Different Response • Students Represent U.C. in D.C. at Center • Chapter Scholars Announced • Notes: Singing Instructions Begin; Student Musician Presents Recital • Final Exam Schedule • Bears Offensive Team Sweeps Haverford Double Header • Crowded House Instruments Variety • Brown Urges Students to Pump on For Fourth Annual Lift-A-Thon • Wood and Lucky Number 13 Gives Runners Record • Tennis Courts Wins • Lady LAX Team Rolling Towards NCAA\u27s • Netters Frustrated in Attempt to Reach End of Season .500 • Athlete of the Week: John Woodhttps://digitalcommons.ursinus.edu/grizzlynews/1188/thumbnail.jp

Comparing airborne algorithms for greenhouse gas flux measurements over the Alberta oil sands

To combat global warming, Canada has committed to reducing greenhouse gases to be (GHGs) 40 %–45 % below 2005 emission levels by 2025. Monitoring emissions and deriving accurate inventories are essential to reaching these goals. Airborne methods can provide regional and area source measurements with small error if ideal conditions for sampling are met. In this study, two airborne mass-balance box-flight algorithms were compared to assess the extent of their agreement and their performance under various conditions. The Scientific Aviation’s (SciAv) Gaussian algorithm and the Environment and Climate Change Canada’s top-down emission rate retrieval algorithm (TERRA) were applied to data from five samples. Estimates were compared using standard procedures, by systematically testing other method fits, and by investigating the effects on the estimates when method assumptions were not met. Results indicate that in standard scenarios the SciAv and TERRA mass-balance box-flight methods produce similar estimates that agree (3%–25%) within algorithm uncertainties (4%– 34%). Implementing a sample-specific surface extrapolation procedure for the SciAv algorithm may improve emission estimation. Algorithms disagreed when non-ideal conditions occurred (i.e., under non-stationary atmospheric conditions). Overall, the results provide confidence in the box-flight methods and indicate that emissions estimates are not overly sensitive to the choice of algorithm but demonstrate that fundamental algorithm assumptions should be assessed for each flight. Using a different method, the Airborne Visible InfraRed Imaging Spectrometer – Next Generation (AVIRIS-NG) independently mapped individual plumes with emissions 5 times larger than the source SciAv sampled three days later. The range in estimates highlights the utility of increased sampling to get a more complete understanding of the temporal variability of emissions and to identify emission sources within facilities. In addition, hourly on-site activity data would provide insight to the observed temporal variability in emissions and make a comparison to reported emissions more straightforward

Mismatched single stranded antisense oligonucleotides can induce efficient dystrophin splice switching

<p>Abstract</p> <p>Background</p> <p>Antisense oligomer induced exon skipping aims to reduce the severity of Duchenne muscular dystrophy by redirecting splicing during pre-RNA processing such that the causative mutation is by-passed and a shorter but partially functional Becker muscular dystrophy-like dystrophin isoform is produced. Normal exons are generally targeted to restore the dystrophin reading frame however, an appreciable subset of dystrophin mutations are intra-exonic and therefore have the potential to compromise oligomer efficiency, necessitating personalised oligomer design for some patients. Although antisense oligomers are easily personalised, it remains unclear whether all patient polymorphisms within antisense oligomer target sequences will require the costly process of producing and validating patient specific compounds.</p> <p>Methods</p> <p>Here we report preclinical testing of a panel of splice switching antisense oligomers, designed to excise exon 25 from the dystrophin transcript, in normal and dystrophic patient cells. These patient cells harbour a single base insertion in exon 25 that lies within the target sequence of an oligomer shown to be effective at removing exon 25.</p> <p>Results</p> <p>It was anticipated that such a mutation would compromise oligomer binding and efficiency. However, we show that, despite the mismatch an oligomer, designed and optimised to excise exon 25 from the normal dystrophin mRNA, removes the mutated exon 25 more efficiently than the mutation-specific oligomer.</p> <p>Conclusion</p> <p>This raises the possibility that mismatched AOs could still be therapeutically applicable in some cases, negating the necessity to produce patient-specific compounds.</p