Optimization of fish gelatin-alginate-genipin as encapsulating matrices for probiotic application using FCCD-RSM

The optimal composition of fish gelatin-alginate-genipin to encapsulate Bifidobacterium pseudocatenulatum G4 was studied. The Face Central Composition Design-Response Surface Methodology (FCCD-RSM) was employed to determine the optimal ration of the matrices in order to obtain high in encapsulation yield (%) and beads strength. Results indicated that optimized matrices could increase the entrapped viable cells and beads strength. The optimal combination of encapsulating matrices was found to be 12.57 % for fish gelatin combined with 5 % alginate and 19.1 mM genipin. Verification experiment confirmed the prediction with low value error and gave indication a good performance prognosis of the optimal formulation

Optimisation for Enhancement of Phenol Degradation by Arthrobacter sp. Strain AQ5-15 from Antarctic Soil Using Conventional and Statistical Approach

The Tenth Symposium on Polar Science/Ordinary sessions : [OB] Polar Biology, Wed. 4 Dec. / Entrance Hall (1st floor) , National Institute of Polar Researc

Effect of Ganoderma lucidum polysaccharides on the growth of Bifidobacterium spp. as assessed using real-time PCR

The use of component from Ganoderma lucidum as prebiotic source is interesting as the G. lucidum itself was known for more than a decade in the traditional Chinese medicine. In this work, Ganoderma lucidum crude polysaccharides (GLCP) and Polysaccharide-fraction number 2 (PF-2) were used as carbon sources in the fermentation with Bifidobacterium sp. The results showed the potential of prebiotic effect of the G. lucidum extract in batch-culture fermentation based on increment in the growth of bacteria used (0.4-1.5 log10CFU/mL) after 18h fermentation. Fermentation was further done using faecal materials as bacterial inocula and bacterial growth changes were examined using real-time PCR. The results showed the ability of GLCP and PF-2 to support the growth of Bifidobacterium genus with 0.3 and 0.7 log10cells/ml increased, respectively. Interestingly, Lactobacillus which is known as beneficial bacterial genus also showed growth increment with 0.7 and 1 log10cells/ml increased. The competition for carbon sources thus inhibits the growth of potentially harmful genus, Salmonella (0.3 and 0.5 log10cells/ml) in comparison to the control

Optimisation of culture composition for glyphosate degradation by Burkholderia vietnamiensis strain AQ5-12

The herbicide glyphosate is often used to control weeds in agricultural lands. However, despite its ability to effectively kill weeds at low cost, health problems are still reported due to its toxicity level. The removal of glyphosate from the environment is usually done by microbiological process since chemical process of degradation is ineffective due to the presence of highly stable bonds. Therefore, finding glyphosate-degrading microorganisms in the soil of interest is crucial to remediate this glyphosate. Burkholderia vietnamiensis strain AQ5-12 was found to have glyphosate-degrading ability. Optimisation of biodegradation condition was carried out utilising one factor at a time (OFAT) and response surface methodology (RSM). Five parameters including carbon and nitrogen source, pH, temperature and glyphosate concentration were optimised. Based on OFAT result, glyphosate degradation was observed to be optimum at fructose concentration of 6, 0.5 g/L ammonia sulphate, pH 6.5, temperature of 32 °C and glyphosate concentration at 100 ppm. Meanwhile, RSM resulted in a better degradation with 92.32% of 100 ppm glyphosate compared to OFAT. The bacterium was seen to tolerate up to 500 ppm glyphosate while increasing concentration results in reduced degradation and bacterial growth rate

Bacterial degradation of caffeine: a review

Caffeine (1,3,7-trimethylxanthine) is an important naturally occurring, commercially purine alkaloid which can be degraded by bacteria. It is a stimulant central nervous system and also has negative withdrawal effects and is present in different varieties of plants such as coffee plant, tea leaves, colanut, cocoa beans and other plant. It is also present in soft drinks and is being used extensively in human consumption and has in addition some therapeutic uses but in minimal amount. Evidence has proved the harmful effects of caffeine thus opening a path in the field of caffeine biodegradation. Biodegradation by bacteria is considered to be the most efficient technique in degrading caffeine within the environment. Even though there are available methods for the removal of caffeine using conventional methods such as water, supercritical and solvent decaffeination but they are lack of accuracy/specificity for the removal of caffeine and in addition to the existing caffeine which sometime remains. Microbial degradation of caffeine provides a safe and cheaper alternative compared to chemical and physical methods. Microbial candidates for caffeine biodegradation are actively being isolated globally. Caffeine degradation can occur in both aerobically and an-aerobically depending on the contaminants. Organisms such as Pseudomonas, Alcaligenes, Aspergillus, Serratia, Penicillium, Klebsiella, Stemphylium, Rhizopus, Rhodococcus, Brevibacterium, Bacillus sp., and Phanerochaete strains have been reported to have the ability to degrade caffeine

Response surface methodology optimisation and kinetics of diesel degradation by a cold-adapted Antarctic bacterium, Arthrobacter sp. strain AQ5-05

Petroleum hydrocarbons, notably diesel oil, are the main energy source for running amenities in the Antarctic region and are the major cause of pollution in this area. Diesel oil spills are one of the major challenges facing management of the Antarctic environment. Bioremediation using bacteria can be an effective and eco-friendly approach for their remediation. However, since the introduction of non-native organisms, including microorganisms, into the Antarctic or between the distinct biogeographical regions within the continent is not permitted under the Antarctic Treaty, it is crucial to discover native oil-degrading, psychrotolerant microorganisms that can be used in diesel bioremediation. The primary aim of the current study is to optimize the conditions for growth and diesel degradation activity of an Antarctic local bacterium, Arthrobacter sp. strain AQ5-05, using the Plackett-Burman approach and response surface method (RSM) via a central composite design (CCD) approach. Based on this approach, temperature, pH, and salinity were calculated to be optimum at 16.30 °C, pH 7.67 and 1.12% (w/v), respectively. A second order polynomial regression model very accurately represented the experimental figures’ interpretation. These optimized environmental conditions increased diesel degradation from 34.5% (at 10 °C, pH 7.00 and 1.00% (w/v) salinity) to 56.4%. Further investigation of the kinetics of diesel reduction by strain AQ5-05 revealed that the Teissier model had the lowest RMSE and AICC values. The calculated values for the Teissier constants of maximal growth rate, half-saturation rate constant for the maximal growth, and half inhibition constants (μmax, Ks, and Ki), were 0.999 h−1, 1.971% (v/v) and 1.764% (v/v), respectively. The data obtained therefore confirmed the potential application of this cold-tolerant strain in the bioremediation of diesel-contaminated Antarctic soils at low temperature

Optimisation of biodegradation conditions for waste canola oil by cold-adapted Rhodococcus sp. AQ5-07 from Antarctica

Background: The potential waste canola oil-degrading ability of the cold-adapted Antarctic bacterial strain Rhodococcus sp. AQ5-07 was evaluated. Globally, increasing waste from food industries generates serious anthropogenic environmental risks that can threaten terrestrial and aquatic organisms and communities. The removal of oils such as canola oil from the environment and wastewater using biological approaches is desirable as the thermal process of oil degradation is expensive and ineffective. Results: Rhodococcus sp. AQ5-07 was found to have high canola oil-degrading ability. Physico-cultural conditions influencing its activity were studied using one-factor-at-a-time (OFAT) and statistical optimisation approaches. Considerable degradation (78.60%) of 3% oil was achieved by this bacterium when incubated with 1.0 g/L ammonium sulphate, 0.3 g/L yeast extract, pH 7.5 and 10% inoculum at 10°C over a 72-h incubation period. Optimisation of the medium conditions using response surface methodology (RSM) resulted in a 9.01% increase in oil degradation (87.61%) when supplemented with 3.5% canola oil, 1.05 g/L ammonium sulphate, 0.28g/L yeast extract, pH 7.5 and 10% inoculum at 12.5°C over the same incubation period. The bacterium was able to tolerate an oil concentration of up to 4.0%, after which decreased bacterial growth and oil degradation were observed. Conclusions: These features make this strain worthy of examination for practical bioremediation of lipid-rich contaminated sites. This is the first report of any waste catering oil degradation by bacteria originating from Antarctica

Scientometric analysis of diesel pollutions in Antarctic Territories: a review of causes and potential bioremediation approaches

Despite the continuous enforcement of Antarctic Treaty System, ATS (1961), today Antarctica is constantly plagued by hydrocarbon pollution from both legacy and present-day wastes, especially near where anthropogenic activities are the most intense. The advances of science have led to multiple breakthroughs to bolster bioremediation techniques and revamp existing laws that prevent or limit the extent of hydrocarbon pollution in Antarctica. This review serves as the extension of collective efforts by the Antarctic communities through visual representation that summarizes decades of findings (circa 2000–2020) from various fields, pertinent to the application of microbe-mediated hydrocarbons remediation. A scientometric analysis was carried out based on indexed, scientific repositories (ScienceDirect and Scopus), encompassing various parameters, including but not limited to keywords co-occurrences, contributing countries, trends and current breakthroughs in polar research. The emergence of keywords such as bioremediation, biosurfactants, petroleum hydrocarbons, biodiesel, metagenomics and Antarctic treaty policy portrays the dynamic shifts in Antarctic affairs during the last decades, which initially focused on exploration and resources exploitation before switching to scientific research and the more recent ecotourism. This review also presents the hydrocarbonoclastic microbes studied in the past, known and proposed metabolic pathways and genes related to hydrocarbon biodegradation as well as bacterial adaptations to low-temperature condition