89 research outputs found

    Metabolite modifications in Solanum lycopersicum roots and leaves under cadmium stress

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    The effects of cadmium (Cd) were investigated on growth and metabolite profiling in roots and leaves of tomato (Solanum lycopersicum L., Var. Ibiza F1) plants exposed for 3 and 10 days to various CdCl2 concentrations (0 - 300 ìM). The aim of this study was to describe metabolite modifications in response to Cd stress and to identify Cd stress markers in the roots and leaves of tomato plants. During the treatment, Cd accumulated  significantly in the roots compared to stems and leaves. Plant growth (root, stem and leaf) decreased when Cd concentration increased. The analysis of 1H-NMR spectra of polar extracts showed clear differences between metabolites amounts (soluble sugars, organic and amino acids) in 30 and 300 ìM Cd-treated plants versus control ones. Among soluble sugars and organic acids, glucose, fructose and citrate contents significantly increased, by a factor 2 to 5 in both leaves and roots of Cd treated plants during the first three days of the treatment and then only in roots. In addition, Cd induced qualitative and quantitative changes in amino acid contents in the roots. Asparagine, glutamine and branched chain amino acids (valine, isoleucine, phenylalanine and tryptophane) significantly accumulated after 10 days of Cd exposure. Asparagine content which increased by 26 fold in the roots of 300 ìM Cd treated plants when compared with control ones, was found to be a good marker for Cd stress. In contrast, few modifications occurred in the leaves in response to Cd, except for tyrosine which content was highly increased (by 10 fold) after three days of treatment with 30 ìM. Taken together, our results show that, the exposure of tomato plants to various Cd concentrations results in significant changes in primary metabolism compounds, especially in the accumulation of some amino and organic acids involved in cellular compartmentation and detoxification of Cd.Key words: Cadmium, sugars, organic acids, amino acids, tomato (Solanum lycopersicum)

    Bounding sup-norms of cusp forms of large level

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    Let f be an L2L^2-normalized weight zero Hecke-Maass cusp form of square-free level N, character χ\chi and Laplacian eigenvalue λ1/4\lambda\geq 1/4. It is shown that fλN1/37\| f \|_{\infty} \ll_{\lambda} N^{-1/37}, from which the hybrid bound fλ1/4(Nλ)δ\|f \|_{\infty} \ll \lambda^{1/4} (N\lambda)^{-\delta} (for some δ>0\delta > 0) is derived. The first bound holds also for f=yk/2Ff = y^{k/2}F where F is a holomorphic cusp form of weight k with the implied constant now depending on k.Comment: version 3: substantially revised versio

    Optical character recognition on heterogeneous SoC for HD automatic number plate recognition system

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    Automatic number plate recognition (ANPR) systems are becoming vital for safety and security purposes. Typical ANPR systems are based on three stages: number plate localization (NPL), character segmentation (CS), and optical character recognition (OCR). Recently, high definition (HD) cameras have been used to improve their recognition rates. In this paper, four algorithms are proposed for the OCR stage of a real-time HD ANPR system. The proposed algorithms are based on feature extraction (vector crossing, zoning, combined zoning, and vector crossing) and template matching techniques. All proposed algorithms have been implemented using MATLAB as a proof of concept and the best one has been selected for hardware implementation using a heterogeneous system on chip (SoC) platform. The selected platform is the Xilinx Zynq-7000 All Programmable SoC, which consists of an ARM processor and programmable logic. Obtained hardware implementation results have shown that the proposed system can recognize one character in 0.63 ms, with an accuracy of 99.5% while utilizing around 6% of the programmable logic resources. In addition, the use of the heterogenous SoC consumes 36 W which is equivalent to saving around 80% of the energy consumed by the PC used in this work, whereas it is smaller in size by 95%

    Real-time automated image segmentation technique for cerebral aneurysm on reconfigurable system-on-chip

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    Cerebral aneurysm is a weakness in a blood vessel that may enlarge and bleed into the surrounding area, which is a life-threatening condition. Therefore, early and accurate diagnosis of aneurysm is highly required to help doctors to decide the right treatment. This work aims to implement a real-time automated segmentation technique for cerebral aneurysm on the Zynq system-on-chip (SoC), and virtualize the results on a 3D plane, utilizing virtual reality (VR) facilities, such as Oculus Rift, to create an interactive environment for training purposes. The segmentation algorithm is designed based on hard thresholding and Haar wavelet transformation. The system is tested on six subjects, for each consists 512 × 512 DICOM slices, of 16 bits 3D rotational angiography. The quantitative and subjective evaluation show that the segmented masks and 3D generated volumes have admitted results. In addition, the hardware implement results show that the proposed implementation is capable to process an image using Zynq SoC in an average time of 5.2 ms

    Determination of zearalenone and its metabolites in endometrial cancer by coupled separation techniques

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    This study presents a selective method of isolation of zearalenone (ZON) and its metabolite, α-zearalenol (α-ZOL), in neoplastically changed human tissue by accelerated solvent and ultrasonic extractions using a mixture of acetonitrile/water (84/16% v/v) as the extraction solvent. Extraction effectiveness was determined through the selection of parameters (composition of the solvent mixture, temperature, pressure, number of cycles) with tissue contamination at the level of nanograms per gram. The produced acetonitrile/water extracts were purified, and analytes were enriched in columns packed with homemade molecularly imprinted polymers. Purified extracts were determined by liquid chromatography (LC) coupled with different detection systems (diode array detection - DAD and mass spectrometry - MS) involving the Ascentis RP-Amide as a stationary phase and gradient elution. The combination of UE-MISPE-LC (ultrasonic extraction - molecularly imprinted solid-phase extraction - liquid chromatography) produced high (R ≈ 95–98%) and repeatable (RSD < 3%) recovery values for ZON and α-ZOL

    Checkpoint Signaling, Base Excision Repair, and PARP Promote Survival of Colon Cancer Cells Treated with 5-Fluorodeoxyuridine but Not 5-Fluorouracil

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    The fluoropyrimidines 5-fluorouracil (5-FU) and FdUrd (5-fluorodeoxyuridine; floxuridine) are the backbone of chemotherapy regimens for colon cancer and other tumors. Despite their widespread use, it remains unclear how these agents kill tumor cells. Here, we have analyzed the checkpoint and DNA repair pathways that affect colon tumor responses to 5-FU and FdUrd. These studies demonstrate that both FdUrd and 5-FU activate the ATR and ATM checkpoint signaling pathways, indicating that they cause genotoxic damage. Notably, however, depletion of ATM or ATR does not sensitize colon cancer cells to 5-FU, whereas these checkpoint pathways promote the survival of cells treated with FdUrd, suggesting that FdUrd exerts cytotoxicity by disrupting DNA replication and/or inducing DNA damage, whereas 5-FU does not. We also found that disabling the base excision (BER) repair pathway by depleting XRCC1 or APE1 sensitized colon cancer cells to FdUrd but not 5-FU. Consistent with a role for the BER pathway, we show that small molecule poly(ADP-ribose) polymerase 1/2 (PARP) inhibitors, AZD2281 and ABT-888, remarkably sensitized both mismatch repair (MMR)-proficient and -deficient colon cancer cell lines to FdUrd but not to 5-FU. Taken together, these studies demonstrate that the roles of genotoxin-induced checkpoint signaling and DNA repair differ significantly for these agents and also suggest a novel approach to colon cancer therapy in which FdUrd is combined with a small molecule PARP inhibitor

    Can gold be used as a hedge against the risks of Sharia-compliant securities? Application for Islamic portfolio management

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    In this paper, we investigate whether gold hedges Sharia-compliant stocks and Sukuk during the period from September 2005 to October 2017. The inference is taken by using both the DCC-GARCH model and the wavelet coherence analysis. On the whole, our finding suggests that gold is not effective in hedging the fluctuations of Sharia-compliant securities. However, we find that combining gold with stocks (and Sukuk) is useful in diversification and portfolio optimization. These results imply that, while gold is an excellent hedge for plain vanilla securities, it is not for Islamic exposures. This is important in light of the increasing amount of assets that are managed according to Islamic screening

    Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015)

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