DSRNA deep sequencing reveals five viral species in common beans.

To investigate which viruses were present in these plants, we performed highthroughput sequencing from preparations enriched for viral dsRNA. Leaves from transgenic BGMV resistant common bean breeding line CNFCT16207 showing severe crinkling were collected in Goiás, Brazil

High incidence of mixed DNA and RNA virus infections in common bean in Central Brazil.

During the winter crop season in 2016 a very high incidence of viruslike symptoms of mosaic, leaf curling and deformation, and plant dwarfing was reported by farmers in central areas of Brazil. Bean plants were collected in commercial farms in Luziânia, Cristalina and experimental plots in Goiânia and Brasília

The compound Poisson limit ruling periodic extreme behaviour of non-uniformly hyperbolic dynamics

We prove that the distributional limit of the normalised number of returns to small neighbourhoods of periodic points of non-uniformly hyperbolic dynamical systems is compound Poisson. The returns to small balls around a fixed point in the phase space correspond to the occurrence of rare events, or exceedances of high thresholds, so that there is a connection between the laws of Return Times Statistics and Extreme Value Laws. The fact that the fixed point in the phase space is a repelling periodic point implies that there is a tendency for the exceedances to appear in clusters whose average sizes is given by the Extremal Index, which depends on the expansion of the system at the periodic point. We recall that for generic points, the exceedances, in the limit, are singular and occur at Poisson times. However, around periodic points, the picture is different: the respective point processes of exceedances converge to a compound Poisson process, so instead of single exceedances, we have entire clusters of exceedances occurring at Poisson times with a geometric distribution ruling its multiplicity. The systems to which our results apply include: general piecewise expanding maps of the interval (Rychlik maps), maps with indifferent fixed points (Manneville-Pomeau maps) and Benedicks-Carleson quadratic maps.Comment: To appear in Communications in Mathematical Physic

18 Sco: a solar twin rich in refractory and neutron-capture elements. Implications for chemical tagging

We study with unprecedented detail the chemical composition and stellar parameters of the solar twin 18 Sco in a strictly differential sense relative to the Sun. Our study is mainly based on high resolution (R ~ 110 000) high S/N (800-1000) VLT UVES spectra, which allow us to achieve a precision of about 0.005 dex in differential abundances. The effective temperature and surface gravity of 18 Sco are Teff = 5823+/-6 K and log g = 4.45+/-0.02 dex, i.e., 18 Sco is 46+/-6 K hotter than the Sun and log g is 0.01+/-0.02 dex higher. Its metallicity is [Fe/H] = 0.054+/-0.005 dex and its microturbulence velocity is +0.02+/-0.01 km/s higher than solar. Our precise stellar parameters and differential isochrone analysis show that 18 Sco has a mass of 1.04+/-0.02M_Sun and that it is ~1.6 Gyr younger than the Sun. We use precise HARPS radial velocities to search for planets, but none were detected. The chemical abundance pattern of 18 Sco displays a clear trend with condensation temperature, showing thus higher abundances of refractories in 18 Sco than in the Sun. Intriguingly, there are enhancements in the neutron-capture elements relative to the Sun. Despite the small element-to-element abundance differences among nearby n-capture elements (~0.02 dex), we successfully reproduce the r-process pattern in the solar system. This is independent evidence for the universality of the r-process. Our results have important implications for chemical tagging in our Galaxy and nucleosynthesis in general.Comment: ApJ, in pres

Discovery of the first maize-infecting mastrevirus in the Americas using a vector-enabled metagenomics approach.

Made available in DSpace on 2018-03-27T00:36:12Z (GMT). No. of bitstreams: 1 10.1007s00705017357121.pdf: 435067 bytes, checksum: cadced4a66fbdc9c0aed7fa23ee95e3d (MD5) Previous issue date: 2018-03-26bitstream/item/174581/1/10.1007-s00705-017-3571-21.pd

Detection of two endornavirus in common bean genotypes in Brazil.

Endornaviruses (Endornaviridae) are persistent viruses that infect important crops such as pepper, rice, broad bean, and beans. However, these viruses are poorly studied and have not yet been reported in Brazil. In this study, we investigated the occurrence of two endornaviruses, Phaseolus vulgaris endornavirus-1 (PvEV-1) and Phaseolus vulgaris endornavirus-2 (PvEV-2) in bean genotypes

Characterization of a new whitefly-transmitted (Bemisia tabaci Meam 1) cytorhabdovirus infecting common bean.

Common bean (Phaseolus vulgaris) is an important crop in Latin America and Africa. The bean yield may be affected by the incidence of different viruses. As part of a virus survey in beans, we have used high-throughput sequencing approach to identify viruses with RNA genome in bean plants collected in Goiás (GO) state. Bioinformatic analysis of the de novoassembled contigs identified a putative cytorhabdovirus (family Rhabdoviridae) with low similarities with Northern cereal mosaic virus (NCMV). This new cytorhabdovirus was denominated Bean associated cytorhabdovirus (BaC). Cytorhabdoviruses have enveloped particles, negative ssRNA of 11-14 kb genome and are usually transmitted by aphids or leafhoppers.CONAF

Passion fruit chlorotic mottle virus: molecular characterization of a new divergent geminivirus in Brazil.

Brazil is one of the major passion fruit producers worldwide. Viral diseases are among the most important constraints for passion fruit production. Here we identify and characterize a new passion fruit infecting-virus belonging to the family Geminiviridae: passion fruit chlorotic mottle virus (PCMoV). PCMoV is a divergent geminivirus unlike previously characterized passion fruit-infecting geminiviruses that belonged to the genus Begomovirus. Among the presently known geminiviruses, it is most closely related to, and shares ~62% genome-wide identity with citrus chlorotic dwarf associated virus (CCDaV) and camelia chlorotic dwarf associated virus (CaCDaV). The 3743 nt PCMoV genome encodes a capsid protein (CP) and replication-associated protein (Rep) that respectively share 56 and 60% amino acid identity with those encoded by CaCDaV. The CPs of PCMoV, CCDaV, and CaCDaV cluster with those of begomovirus whereas their Reps with those of becurtoviruses. Hence, these viruses likely represent a lineage of recombinant begomo-like and becurto-like ancestral viruses. Furthermore, PCMoV, CCDaV, and CaCDaV genomes are ~12–30% larger than monopartite geminiviruses and this is primarily due to the encoded movement protein (MP; 891–921 nt) and this MP is most closely related to that encoded by the DNA-B component of bipartite begomoviruses. Hence, PCMoV, CCDaV, and CaCDaV lineage of viruses may represent molecules in an intermediary step in the evolution of bipartite begomoviruses (~5.3 kb) from monopartite geminiviruses (~2.7–3 kb). An infectious clone of PCMoV systemically infected Nicotiana benthamina, Arabidopsis thaliana, and Passiflora edulis

Vacuum Instabilities with a Wrong-Sign Higgs-Gluon-Gluon Amplitude

The recently discovered 125 GeV boson appears very similar to a Standard Model Higgs, but with data favoring an enhanced h to gamma gamma rate. A number of groups have found that fits would allow (or, less so after the latest updates, prefer) that the h-t-tbar coupling have the opposite sign. This can be given meaning in the context of an electroweak chiral Lagrangian, but it might also be interpreted to mean that a new colored and charged particle runs in loops and produces the opposite-sign hGG amplitude to that generated by integrating out the top, as well as a contribution reinforcing the W-loop contribution to hFF. In order to not suppress the rate of h to WW and h to ZZ, which appear to be approximately Standard Model-like, one would need the loop to "overshoot," not only canceling the top contribution but producing an opposite-sign hGG vertex of about the same magnitude as that in the SM. We argue that most such explanations have severe problems with fine-tuning and, more importantly, vacuum stability. In particular, the case of stop loops producing an opposite-sign hGG vertex of the same size as the Standard Model one is ruled out by a combination of vacuum decay bounds and LEP constraints. We also show that scenarios with a sign flip from loops of color octet charged scalars or new fermionic states are highly constrained.Comment: 20 pages, 8 figures; v2: references adde