Data from: Conservation priorities for endangered coastal North African Pennisetum glaucum L. landrace populations as inferred from phylogenetic considerations and population structure analysis

The increasing anthropologic pressure and the modernization of agriculture have led to a forsaking of pearl millet traditional cultivars inducing a progressive loss of the genetic variability encompassed in this locally-adapted germplasm. Imperatively, national efforts based on robust data gleaned from genetic surveys have to be undertaken in order to set up suitable conservation priorities. Inthis study, in addition to the assessment of the genetic diversity and population structure among and within a set of seven pearl millet landrace populations from coastal North Africa, demographic and phylogenetic data, conservation priority scores were calculated according to Vane-Wright et al. (1991). To date, genetic diversity of pearl millet in North Africa is still poorly documented. The present survey reports for the first time the use of highly informative nSSR markers (PIC =0.74) on P. glaucum landraces representative of the Mediterranean coastline of North Africa. A high level of genetic diversity was obtained within the investigated landraces (He=0.80) at the population level. FST, AFC-3D and Bayesian clustering underlined significant differentiation and an apparent genetic structure according to geographical origin. Phylogenetic considerations integrated with demographic and genetic information enabled conclusive inferences of highly prioritized populations for conservation. Populations Haouaria, Hammem Laghzez, Mahdia and Medenine representatives of the main pearl millet growing areas in Tunisia and cultivated in the North African littoral should be strongly recommended for an ex-situ conservation program. Dynamic on-farm conservation method is also required as it allows to the local landraces to evolve in different environments while maintaining their adaptation potentials

Genomic Designing of Pearl Millet:A Resilient Crop for Arid and Semi-arid Environments

Pearl millet [Pennisetum glaucum (L.) R. Br.; Syn. Cenchrus americanus (L.) Morrone] is the sixth most important cereal in the world. Today, pearl millet is grown on more than 30 million ha mainly in West and Central Africa and the Indian sub-continent as a staple food for more than 90 million people in agriculturally marginal areas. It is rich in proteins and minerals and has numerous health benefits such as being gluten-free and having slow-digesting starch. It is grown as a forage crop in temperate areas. It is drought and heat tolerant, and a climate-smart crop that can withstand unpredictable variability in climate. However, research on pearl millet improvement is lagging behind other major cereals mainly due to limited investment in terms of man and money power. So far breeding achievements include the development of cytoplasmic male sterility (CMS), maintenance counterparts (rf) system and nuclear fertility restoration genes (Rf) for hybrid breeding, dwarfing genes for reduced height, improved input responsiveness, photoperiod neutrality for short growing season, and resistance to important diseases. Further improvement of pearl millet for genetic yield potential, stress tolerance, and nutritional quality traits would enhance food and nutrition security for people living in agriculturally dissolute environments. Application of molecular technology in the pearl millet breeding program has a promise in enhancing the selection efficiency while shortening the lengthy phenotypic selection process ultimately improving the rate of genetic gains. Linkage analysis and genome-wide association studies based on different marker systems in detecting quantitative trait loci (QTLs) for important agronomic traits are well demonstrated. Genetic resources including wild relatives have been categorized into primary, secondary and tertiary gene pools based on the level of genetic barriers and ease of gene introgression into pearl millet. A draft on pearl millet whole genome sequence was recently published with an estimated 38,579 genes annotated to establish genomic-assisted breeding. Resequencing a large number of germplasm lines and several population genomic studies provided a valuable insight into population structure, genetic diversity and domestication history of the crop. Successful improvement in combination with modern genomic/genetic resources, tools and technologies and adoption of pearl millet will not only improve the resilience of global food system through on-farm diversification but also dietary intake which depends on diminishingly fewer crops