Genetic variation of wild and hatchery populations of the catla Indian major carp (Catla catla Hamilton 1822: Cypriniformes, Cyprinidae) revealed by RAPD markers

Genetic variation is a key component for improving a stock through selective breeding programs. Randomly amplified polymorphic DNA (RAPD) markers were used to assess genetic variation in three wild population of the catla carp (Catla catla Hamilton 1822) in the Halda, Jamuna and Padma rivers and one hatchery population in Bangladesh. Five decamer random primers were used to amplify RAPD markers from 30 fish from each population. Thirty of the 55 scorable bands were polymorphic, indicating some degree of genetic variation in all the populations. The proportion of polymorphic loci and gene diversity values reflected a relatively higher level of genetic variation in the Halda population. Sixteen of the 30 polymorphic loci showed a significant (p < 0.05, p < 0.01, p < 0.001) departure from homogeneity and the FST values in the different populations indicated some degree of genetic differentiation in the population pairs. Estimated genetic distances between populations were directly correlated with geographical distances. The unweighted pair group method with averages (UPGMA) dendrogram showed two clusters, the Halda population forming one cluster and the other populations the second cluster. Genetic variation of C. catla is a useful trait for developing a good management strategy for maintaining genetic quality of the species

Maternal, dominance and additive genetic effects in Nile tilapia; influence on growth, fillet yield and body size traits

There are only few studies of dominance effects in non-inbred aquaculture species, since commonly used mating designs often have low power to separate dominance, maternal and common environmental effects. Here, a factorial design with reciprocal cross, common rearing of eggs and subsequent lifecycle stages and pedigree assignment using DNA microsatellites was used to separate these effects and estimate dominance (d2) and maternal (m2) ratios in Nile tilapia for six commercial traits. The study included observations on 2524 offspring from 155 full-sib families. Substantial contributions of dominance were observed (P < 0.05) for body depth (BD) and body weight at harvest (BWH) with estimates of d2 = 0.27 (s.e. 0.09) and 0.23 (s.e. 0.09), respectively in the current breeding population. In addition the study found maternal variance (P < 0.05) for BD, BWH, body thickness and fillet weight explaining ~10% of the observed phenotypic variance. For fillet yield (FY) and body length (BL), no evidence was found for either maternal or dominance variance. For traits exhibiting maternal variance, including this effect in evaluations caused substantial re-ranking of selection candidates, but the impact of including dominance effects was notably less. Breeding schemes may benefit from utilising maternal variance in increasing accuracy of evaluations, reducing bias, and developing new lines, but the utilisation of the dominance variance may require further refinement of parameter estimates.publishedVersio

Allozyme variation in natural and cultured populations in two tilapia species: Oreochromis niloticus and Tilapia zillii

We investigated the electrophoretic polymorphism at 30 protein loci in 27 wild and cultured populations of two tilapia species, Tilapia zillii and Oreochromis niloticus. Single and joint segregations were analysed at 12 polymorphic loci in full-sib families. All the loci showed single segregation in agreement with the Mendelian expectations, and two nonrandom joint segregations were found. In total, 26 loci were polymorphic and 12 were diagnostic between the two species. A pronounced differentiation was observed between the Ivory Coast and Nilo-Sudanian T. zillii populations (average Nei's standard genetic distance = 0.13). Within the Nilo-Sudanian region, the level of variation observed in O. niloticus and T. zillii was rather low when compared with other freshwater species analysed at similar macrogeographical scales. The same pattern of geographical differentiation was found between the west and east African populations in both species suggesting that this structuring mainly reflected the same palaeo-geographical events. Most of the geographical variation observed in the Nile tilapia populations analysed here was present in the cultured stocks. In contrast to fish-farmed stocks analysed in other countries, those from the Ivory Coast and Niger displayed neither evidence of loss of genetic diversity nor any trace of introgression with other cultured tilapia species, indicating that these stocks have been properly managed