Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus

The hyperthermophilic archaeon Sulfolobus solfataricus contains an unusual large number of sugar binding proteins that are synthesized as precursors with a class III signal peptide. Such signal peptides are commonly used to direct archaeal flagellin subunits or bacterial (pseudo)pilins into extracellular macromolecular surface appendages. Likewise, S. solfataricus binding proteins have been suggested to assemble in higher ordered surface structures as well, tentatively termed the bindosome. Here we show that S. solfataricus contains a specific system that is needed for the functional surface localization of sugar binding proteins. This system, encoded by the bas (bindosome assembly system) operon, is composed of five proteins: basABC, three homologues of so-called bacterial (pseudo)pilins; BasE, a cytoplasmic ATPase; and BasF, an integral membrane protein. Deletion of either the three (pseudo)pilin genes or the basEF genes resulted in a severe defect of the cells to grow on substrates which are transported by sugar binding proteins containing class III signal peptides, while growth on glucose and maltose was restored when the corresponding genes were reintroduced in these cells. Concomitantly, ΔbasABC and ΔbasEF cells were severely impaired in glucose uptake even though the sugar binding proteins were normally secreted across the cytoplasmic membrane. These data underline the hypothesis that the bas operon is involved in the functional localization of sugar binding proteins at the cell surface of S. solfataricus. In contrast to surface structure assembly systems of Gram-negative bacteria, the bas operon seems to resemble an ancestral simplified form of these machineries.

Direct binding of cytosolic NDP kinases to membrane lipids is regulated by nucleotides

AbstractIn spite of their complete lack of any structural features that characterize membrane proteins, cytosolic nucleoside-diphosphate kinases (NDPKs) have been found repeatedly to associate with membranes. In some instances the recruitment of cytosolic NDPKs to membranes was attributed to interactions with peripheral or integral membrane proteins, but in many cases the mechanism underlying the association of NDPKs with membranes remained unknown. We show here that cytosolic NDPKs bind directly to membrane lipids in a dynamic process that is controlled by its substrates, nucleoside tri- and diphosphates, and can be fully reconstituted with chemically defined, protein-free phospholipids and recombinant NDPK, or with purified NDPK. Our results uncover a novel mechanism for the reversible targeting of soluble NDPKs to membranes, where they may act as a reservoir of high energy phosphate, supporting the operation of membrane-based processes that utilize nucleotides other than ATP, such as intracellular traffic and phospholipid biosynthesis

Receptor Activation Regulates Cortical, but not Vesicular Localization of NDP Kinase

We used immunofluorescence techniques to determine the localization of nucleoside diphosphate (NDP) kinase in NIH-3T3 fibroblasts. We found that cytoplasmic NDP kinase can be separated into two populations according to subcellular localization and response to extracellular stimuli. Specifically, within minutes of stimulation of resting fibroblasts with serum, growth factors or bombesin, a portion of NDP kinase becomes associated with membrane ruffles and lamellipodia. Another pool of NDP kinase accumulates independently of stimulation around intracellular vesicles. Transfection of cells with activated Rac mimics, whereas expression of dominant negative Rac inhibits, the effects of extracellular stimulation on the translocation of NDP kinase to the cell cortex. Neither Rac mutant affects the vesicle-associated pool. Association of NDP kinase with vesicles depends on microtubule integrity and is disrupted by nocodazole. In cell-free assays NDP kinase binds tightly to membrane vesicles associated with taxol-stabilized microtubules. Binding of NDP kinase to this fraction is reduced by ATP and abolished by GTP, as well as guanine nucleotides that are NDP kinase substrates. Thus, the localization of the two NDP kinase pools identified here is regulated independently by distinct cellular components: the appearance of cortical NDP kinase is a consequence of Rac activation, whereas vesicular NDP kinase is responsive to microtubule dynamics and nucleotides, in particular GTP. These results suggest that in fibroblasts NDP kinase participates in Racrelated cortical events and in GTP-dependent processes linked to intracellular vesicle trafficking

Duality and Braiding in Twisted Quantum Field Theory

We re-examine various issues surrounding the definition of twisted quantum field theories on flat noncommutative spaces. We propose an interpretation based on nonlocal commutative field redefinitions which clarifies previously observed properties such as the formal equivalence of Green's functions in the noncommutative and commutative theories, causality, and the absence of UV/IR mixing. We use these fields to define the functional integral formulation of twisted quantum field theory. We exploit techniques from braided tensor algebra to argue that the twisted Fock space states of these free fields obey conventional statistics. We support our claims with a detailed analysis of the modifications induced in the presence of background magnetic fields, which induces additional twists by magnetic translation operators and alters the effective noncommutative geometry seen by the twisted quantum fields. When two such field theories are dual to one another, we demonstrate that only our braided physical states are covariant under the duality.Comment: 35 pages; v2: Typos correcte

Lattice Perturbation Theory in Noncommutative Geometry and Parity Anomaly in 3D Noncommutative QED

We formulate lattice perturbation theory for gauge theories in noncommutative geometry. We apply it to three-dimensional noncommutative QED and calculate the effective action induced by Dirac fermions. In particular "parity invariance" of a massless theory receives an anomaly expressed by the noncommutative Chern-Simons action. The coefficient of the anomaly is labelled by an integer depending on the lattice action, which is a noncommutative counterpart of the phenomenon known in the commutative theory. The parity anomaly can also be obtained using Ginsparg-Wilson fermions, where the masslessness is guaranteed at finite lattice spacing. This suggests a natural definition of the lattice-regularized Chern-Simons theory on a noncommutative torus, which could enable nonperturbative studies of quantum Hall systems.Comment: 31 pages. LaTeX, feynmf. Minor changes, references added and typos corrected. Final version published in JHE

Time dependent solitons of noncommutative Chern-Simons theory coupled to scalar fields

We study one- and two-soliton solutions of noncommutative Chern-Simons theory coupled to a nonrelativistic or a relativistic scalar field. In the nonrelativistic case, we find a tower of new stationary time-dependent solutions, all with the same charge density, but with increasing energies. The dynamics of these solitons cannot be studied using traditional moduli space techniques, but we do find a nontrivial symplectic form on the phase space indicating that the moduli space is not flat. In the relativistic case we find the metric on the two soliton moduli space.Comment: 22 pages, 2 figures, JHEP3 style. v2: This paper is a thoroughly revised version. We thank P.A. Horvathy, L. Martina and P.C. Stichel for illuminating comments that led us to reconsider some of our previously reported results; see note added at the end of the paper. v3: Acknowledgements adde

Spectrum of Schroedinger field in a noncommutative magnetic monopole

The energy spectrum of a nonrelativistic particle on a noncommutative sphere in the presence of a magnetic monopole field is calculated. The system is treated in the field theory language, in which the one-particle sector of a charged Schroedinger field coupled to a noncommutative U(1) gauge field is identified. It is shown that the Hamiltonian is essentially the angular momentum squared of the particle, but with a nontrivial scaling factor appearing, in agreement with the first-quantized canonical treatment of the problem. Monopole quantization is recovered and identified as the quantization of a commutative Seiberg-Witten mapped monopole field.Comment: 16 pages; references adde

Prospects for observations of high-energy cosmic tau neutrinos

We study prospects for the observations of high-energy cosmic tau neutrinos (E \geq 10^6 GeV) originating from proton acceleration in the cores of active galactic nuclei. We consider the possibility that vacuum flavor neutrino oscillations induce a tau to muon neutrino flux ratio greatly exceeding the rather small value expected from intrinsic production. The criterias and event rates for under water/ice light Cerenkov neutrino telescopes are given by considering the possible detection of downgoing high-energy cosmic tau neutrinos through characteristic double shower events.Comment: 10 pages, Revtex, 3 figures included with eps

Numerical simulations of a non-commutative theory: the scalar model on the fuzzy sphere

We address a detailed non-perturbative numerical study of the scalar theory on the fuzzy sphere. We use a novel algorithm which strongly reduces the correlation problems in the matrix update process, and allows the investigation of different regimes of the model in a precise and reliable way. We study the modes associated to different momenta and the role they play in the ``striped phase'', pointing out a consistent interpretation which is corroborated by our data, and which sheds further light on the results obtained in some previous works. Next, we test a quantitative, non-trivial theoretical prediction for this model, which has been formulated in the literature: The existence of an eigenvalue sector characterised by a precise probability density, and the emergence of the phase transition associated with the opening of a gap around the origin in the eigenvalue distribution. The theoretical predictions are confirmed by our numerical results. Finally, we propose a possible method to detect numerically the non-commutative anomaly predicted in a one-loop perturbative analysis of the model, which is expected to induce a distortion of the dispersion relation on the fuzzy sphere.Comment: 1+36 pages, 18 figures; v2: 1+55 pages, 38 figures: added the study of the eigenvalue distribution, added figures, tables and references, typos corrected; v3: 1+20 pages, 10 eps figures, new results, plots and references added, technical details about the tests at small matrix size skipped, version published in JHE

Algebraic approach to quantum field theory on a class of noncommutative curved spacetimes

In this article we study the quantization of a free real scalar field on a class of noncommutative manifolds, obtained via formal deformation quantization using triangular Drinfel'd twists. We construct deformed quadratic action functionals and compute the corresponding equation of motion operators. The Green's operators and the fundamental solution of the deformed equation of motion are obtained in terms of formal power series. It is shown that, using the deformed fundamental solution, we can define deformed *-algebras of field observables, which in general depend on the spacetime deformation parameter. This dependence is absent in the special case of Killing deformations, which include in particular the Moyal-Weyl deformation of the Minkowski spacetime.Comment: LaTeX 14 pages, no figures, svjour3.cls style; v2: clarifications and references added, compatible with published versio