1,702 research outputs found

    Chiral sedimentation of extended objects in viscous media

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    We study theoretically the chirality of a generic rigid object's sedimentation in a fluid under gravity in the low Reynolds number regime. We represent the object as a collection of small Stokes spheres or stokeslets, and the gravitational force as a constant point force applied at an arbitrary point of the object. For a generic configuration of stokeslets and forcing point, the motion takes a simple form in the nearly free draining limit where the stokeslet radius is arbitrarily small. In this case, the internal hydrodynamic interactions between stokeslets are weak, and the object follows a helical path while rotating at a constant angular velocity ω\omega about a fixed axis. This ω\omega is independent of initial orientation, and thus constitutes a chiral response for the object. Even though there can be no such chiral response in the absence of hydrodynamic interactions between the stokeslets, the angular velocity obtains a fixed, nonzero limit as the stokeslet radius approaches zero. We characterize empirically how ω\omega depends on the placement of the stokeslets, concentrating on three-stokeslet objects with the external force applied far from the stokeslets. Objects with the largest ω\omega are aligned along the forcing direction. In this case, the limiting ω\omega varies as the inverse square of the minimum distance between stokeslets. We illustrate the prevalence of this robust chiral motion with experiments on small macroscopic objects of arbitrary shape.Comment: 35 pages, 10 figures; Section VII.A redone and other edits made for clarity. Accepted by Phys. Rev.

    The Identification of the More Important Prairie Hay Grasses of Nebraska by Their Vegetative Characters

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    It is convenient and sometimes necessary to identify the grasses in their vegetative stage of growth. This is especially desirable in a study of the vegetation of native hay meadows and permanent pastures. This key is prepared as a guide in the identification of the more important prairie hay grasses of Nebraska. The meadows are often harvested before the floral parts of many of the grasses appear. If it is desired, therefore, to study the botanical composition of the native meadows, it becomes necessary to rely on identification of many of the grasses by means of vegetative characters

    The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

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    Background. As whole genome sequence data from bacterial isolates becomes cheaper to generate, computational methods are needed to correlate sequence data with biological observations. Here we present the large-scale BLAST score ratio (LS-BSR) pipeline, which rapidly compares the genetic content of hundreds to thousands of bacterial genomes, and returns a matrix that describes the relatedness of all coding sequences (CDSs) in all genomes surveyed. This matrix can be easily parsed in order to identify genetic relationships between bacterial genomes. Although pipelines have been published that group peptides by sequence similarity, no other software performs the rapid, large-scale, full-genome comparative analyses carried out by LS-BSR. Results. To demonstrate the utility of the method, the LS-BSR pipeline was tested on 96 Escherichia coli and Shigella genomes; the pipeline ran in 163 min using 16 processors, which is a greater than 7-fold speedup compared to using a single processor. The BSR values for each CDS, which indicate a relative level of relatedness, were then mapped to each genome on an independent core genome single nucleotide polymorphism (SNP) based phylogeny. Comparisons were then used to identify clade specific CDS markers and validate the LS-BSR pipeline based on molecular markers that delineate between classical E. coli pathogenic variant (pathovar) designations. Scalability tests demonstrated that the LS-BSR pipeline can process 1,000 E. coli genomes in 27-57 h, depending upon the alignment method, using 16 processors. Conclusions. LS-BSR is an open-source, parallel implementation of the BSR algorithm, enabling rapid comparison of the genetic content of large numbers of genomes. The results of the pipeline can be used to identify specific markers between user-defined phylogenetic groups, and to identify the loss and/or acquisition of genetic information between bacterial isolates. Taxa-specific genetic markers can then be translated into clinical diagnostics, or can be used to identify broadly conserved putative therapeutic candidates

    Stock Return Seasonalities and the Tax-Loss Selling Hypothesis: Analysis of the Arguments and Australian Evidence

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    A ‘tax-loss selling’ hypothesis has frequently been advanced to explain the ‘January effect’ reported in this issue by Keim. This paper concludes that U.S. tax laws do not unambiguously predict such an effect. Since Australia has similar tax laws but a July–June tax year, the hypothesis predicts a small-firm July premium. Australian returns show pronounced December–January and July–August seasonals, and a premium for the smallest-firm decile of about four percent per month across all months. This contrasts with the U.S. data in which the small-firm premium is concentrated in January. We conclude that the relation between the U.S. tax year and the January seasonal may be more correlation than causation

    Variation in metabolic responses to meal challenges differing in glycemic index in healthy women: Is it meaningful?

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    <p>Abstract</p> <p>Background</p> <p>Established clinical tests are commonly used in disease diagnosis, but tools that enhance identification of metabolic dysfunctions are needed. This study was conducted to identify typical and atypical metabolite temporal patterns in response to paired meal challenge tests.</p> <p>Design</p> <p>Metabolic responses to high and low glycemic index (GI) meals were tested in 24 healthy pre-menopausal women, aged 20-50 y, with BMI of 25-30 kg/m<sup>2 </sup>using a cross-over design. On test days, blood glucose, insulin, leptin and non-esterified fatty acids were measured after an overnight fasting, and for 8 h following test meal consumption. The data were range scaled, and multivariate statistics were used to assess the presence of distinct response groups to the meal challenge tests.</p> <p>Results</p> <p>As expected, participants showed higher circulating glucose and insulin in response to the high GI compared to the low GI meal challenge. However, using range-scaling and Principal Component Analysis, three distinct groups were identified based on differential responses to the paired challenges. Members of the most populated group (n = 18) displayed little deviation from the expected response to the two meal challenges. Two minor groups (n = 3/group) with distinct responses were observed, one suggestive of sub-clinical insulin resistance, and the other suggestive of hyperleptinemia.</p> <p>Conclusions</p> <p>The differential responses of glucose, insulin and leptin to low and high glycemic test meals revealed three response groups. Dietary intervention studies traditionally evaluate group responses, and aim to identify the overall effect in the population studied. In contrast, our study analyzed the variance in the meal challenge responses, using an integrated physiological approach, rather than a reductionist approach. This phenotyping approach may be useful for detecting subclinical metabolic dysfunctions, and it could contribute to improved personalized nutrition management. This study is registered in ClinicalTrials.gov, record #200210295</p

    Harmonic lattice behavior of two-dimensional colloidal crystals

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    Using positional data from video-microscopy and applying the equipartition theorem for harmonic Hamiltonians, we determine the wave-vector-dependent normal mode spring constants of a two-dimensional colloidal model crystal and compare the measured band-structure to predictions of the harmonic lattice theory. We find good agreement for both the transversal and the longitudinal mode. For q→0q\to 0, the measured spring constants are consistent with the elastic moduli of the crystal.Comment: 4 pages, 3 figures, submitte

    Microstructural and chemical transformation of thin Ti/Pd and TiDy/Pd bi-later films induced by vacuum annealing

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    Using a combination of scanning electron microscopy, transmission electron microscopy (TEM), X-ray diffraction and X-ray photoelectron spectroscopy (XPS), we made a comparative study of the high-temperature annealing impact on thin titanium deuteride (TiD y ) films covered by an ultrathin Pd layer, and on Ti/Pd bilayer films. The bilayer films were prepared under ultrahigh vacuum conditions and were in situ annealed using the same annealing procedure. It was found that the surface and the bulk morphology of both films undergo different annealing-induced transformations, leading to an extensive intermixing between the Ti and Pd layers and the formation of a new PdTi2 bimetallic phase. Energy-filtered TEM imaging and energy-dispersive X-ray spectrometry analysis, as well as XPS depth profiling all provided evidence of a different distribution of Pd and Ti in the annealed TiD y /Pd film compared with the annealed Ti/Pd film. Our results show that thermal decomposition of TiD y , as a consequence of annealing the TiD y /Pd film, modifies the intermixing process, thereby promoting Ti diffusion into the Pd-rich top layer of the TiD y film and thus providing a more likely path for the formation of the PdTi2 phase than in an annealed Ti/Pd fil

    On the odd-even staggering of mean square charge radii in the light krypton and strontium region

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    Recently isotope shifts of 72,74−96^{72,74-96}Kr and 77−100^{77-100}Sr have been measured at the ISOLDE/ CERN mass separator facility by collinear laser spectroscopy. The deduced changes in mean square charge radii reveal sharp transitions in nuclear shape from spherical near the magic neutron number N=50 towards strongly deformed for both the neutron deficient and neutron rich isotopes far from stability. The mean square charge radii of the neutron deficient isotopes exhibit a sign change of the odd-even staggering (OES), i.e. below the neutron number N=46 the radius is systematically larger for the odd-N nuclei than for their even-N neighbours. This is in contrast to the situation of normal OES which is observed for the heavier isotopes. The inversion of the OES is interpreted as an effect of polarization, triggered by the addition of an unpaired neutron and driving the soft even-even core into stable strong deformation
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