3,603 research outputs found
'Lactobacillus fermentum' 3872 as a potential tool for combatting 'Campylobacter jejuni' infections
Due to the global spread of multidrug resistant pathogenic bacteria, alternative approaches in combating infectious diseases are required. One such approach is the use of probiotics. Lactobacillus fermentum 3872 is a promising probiotic bacterium producing a range of antimicrobial compounds, such as hydrogen peroxide and lactic acid. In addition, previous studies involving genome sequencing and analysis of L. fermentum 3872 allowed the identification of a gene encoding a cell surface protein referred to as collagen binding protein (CBP) (not found in other strains of the species, according to the GenBank database), consisting of a C-terminal cell wall anchor domain (LPXT), multiple repeats of ‘B domains' that form stalks presenting an “A domain” required for adhesion. In this study, we found that the CBP of L. fermentum 3872 binds to collagen I present on the surface of the epithelial cells lining the gastrointestinal tract. Moreover, we found that this host receptor is also used for attachment by the major gastrointestinal pathogen, Campylobacter jejuni. Furthermore, we identified an adhesin involved in such interaction and demonstrated that both L. fermentum 3872 and its CBP can inhibit binding of this pathogen to collagen I. Combined with the observation that C. jejuni growth is affected in the acidic environment produced by L. fermentum 3872, the finding provides a good basis for further investigation of this strain as a potential tool for fighting Campylobacter infections
Ultrathin epitaxial Fe films in vicinal GaAs(001): A study by spin-resolved photoelectron spectroscopy
Thin epitaxial Fe films have been grown on vicinal GaAs(001) substrates and their remanent magnetic properties and the degree of substrate atom diffusion investigated using synchrotron-based photoelectron spectroscopy. The vicinal Fe films, though exhibiting greater As diffusion than their singular homologues, displayed better film quality both from the structural and the magnetic points of view. The spin-resolved valence spectra of the vicinal films resemble those for crystalline bulk Fe at lower film thicknesses than for singular films
Calculation of the Phase Behavior of Lipids
The self-assembly of monoacyl lipids in solution is studied employing a model
in which the lipid's hydrocarbon tail is described within the Rotational
Isomeric State framework and is attached to a simple hydrophilic head.
Mean-field theory is employed, and the necessary partition function of a single
lipid is obtained via a partial enumeration over a large sample of molecular
conformations. The influence of the lipid architecture on the transition
between the lamellar and inverted-hexagonal phases is calculated, and
qualitative agreement with experiment is found.Comment: to appear in Phys.Rev.
CASTNet: Community-Attentive Spatio-Temporal Networks for Opioid Overdose Forecasting
Opioid overdose is a growing public health crisis in the United States. This
crisis, recognized as "opioid epidemic," has widespread societal consequences
including the degradation of health, and the increase in crime rates and family
problems. To improve the overdose surveillance and to identify the areas in
need of prevention effort, in this work, we focus on forecasting opioid
overdose using real-time crime dynamics. Previous work identified various types
of links between opioid use and criminal activities, such as financial motives
and common causes. Motivated by these observations, we propose a novel
spatio-temporal predictive model for opioid overdose forecasting by leveraging
the spatio-temporal patterns of crime incidents. Our proposed model
incorporates multi-head attentional networks to learn different representation
subspaces of features. Such deep learning architecture, called
"community-attentive" networks, allows the prediction of a given location to be
optimized by a mixture of groups (i.e., communities) of regions. In addition,
our proposed model allows for interpreting what features, from what
communities, have more contributions to predicting local incidents as well as
how these communities are captured through forecasting. Our results on two
real-world overdose datasets indicate that our model achieves superior
forecasting performance and provides meaningful interpretations in terms of
spatio-temporal relationships between the dynamics of crime and that of opioid
overdose.Comment: Accepted as conference paper at ECML-PKDD 201
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Preparation of films of a highly aligned lipid cubic phase
We demonstrate a method by which we can produce an oriented film of an inverse bicontinuous cubic phase (QII D) formed by the lipid monoolein (MO). By starting with the lipid as a disordered precursor (the L3 phase) in the presence of butanediol, we can obtain a film of the QII D phase showing a high degree of in-plane orientation by controlled dilution of the sample under shear within a linear flow cell. We demonstrate that the direction of orientation of the film is different from that found in the oriented bulk material that we have reported previously; therefore, we can now reproducibly form QII D samples oriented with either the [110] or the [100] axis aligned in the flow direction depending on the method of preparation. The deposition of MO as a film, via a moving fluid− air interface that leaves a coating of MO in the L3 phase on the capillary wall, leads to a sample in the [110] orientation. This contrasts with the bulk material that we have previously demonstrated to be oriented in the [100] direction, arising from flow producing an oriented bulk slug of material within the capillary tube. The bulk sample contains significant amounts of residual butanediol, which can be estimated from the lattice parameter of the QII D phase obtained. The sample orientation and lattice parameters are determined from synchrotron small-angle X-ray scattering patterns and confirmed by simulations. This has potential applications in the production of template materials and the growth of protein crystals for crystallography as well as deepening our understanding of the mechanisms underlying the behavior of lyotropic liquid-crystal phases
Sub-Angstrom Microscopy Through Incoherent Imaging and Image Reconstruction
Z-contrast scanning transmission electron microscopy (STEM) with a high-angle annular detector breaks the coherence of the imaging process, and provides an incoherent image of a crystal projection. Even in the presence of strong dynamical diffraction, the image can be accurately described as a convolution between an object function, sharply peaked at the projected atomic sites, and the probe intensity profile. Such an image can be inverted intuitively without the need for model structures, and therefore provides the important capability to reveal unanticipated interfacial arrangements. It represents a direct image of the crystal projection, revealing the location of the atomic columns and their relative high-angle scattering power. Since no phase is associated with a peak in the object function or the contrast transfer function, extension to higher resolution is also straightforward. Image restoration techniques such as maximum entropy, in conjunction with the 1.3 A probe anticipated for a 300 kV STEM, appear to provide a simple and robust route to the achievement of sub-Angstrom resolution electron microscopy
Liquid crystal alignment induced by micron-scale patterned surfaces
Induced bulk orientation of nematic liquid crystal in contact with micron-scale patterned surfaces is investigated using the Landau-de Gennes theory by means of three-dimensional simulations. The effect of the size and spacing of square cross-sectional well and post patterns is investigated and shown to influence the orientation of the liquid crystal bulk, far removed from the surface. Additionally, the effective anchoring strength of the induced alignment is estimated using a modified version of the torque balance method. Both azimuthal and zenithal multistability are shown to exist within unique ranges of feature sizes
Pressure Induced Hydration Dynamics of Membranes
Pressure-jump initiated time-resolved x-ray diffraction studies of dynamics
of the hydration of the hexagonal phase in biological membranes show that (i)
the relaxation of the unit cell spacing is non-exponential in time; (ii) the
Bragg peaks shift smoothly to their final positions without significant
broadening or loss in crystalline order. This suggests that the hydration is
not diffusion limited but occurs via a rather homogeneous swelling of the whole
lattice, described by power law kinetics with an exponent .Comment: REVTEX 3, 10 pages,3 figures(available on request),#
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