Simple ecological trade-offs give rise to emergent cross-ecosystem distributions of a coral reef fish

Ecosystems are intricately linked by the flow of organisms across their boundaries, and such connectivity can be essential to the structure and function of the linked ecosystems. For example, many coral reef fish populations are maintained by the movement of individuals from spatially segregated juvenile habitats (i.e., nurseries, such as mangroves and seagrass beds) to areas preferred by adults. It is presumed that nursery habitats provide for faster growth (higher food availability) and/or low predation risk for juveniles, but empirical data supporting this hypothesis is surprisingly lacking for coral reef fishes. Here, we investigate potential mechanisms (growth, predation risk, and reproductive investment) that give rise to the distribution patterns of a common Caribbean reef fish species, Haemulon flavolineatum (French grunt). Adults were primarily found on coral reefs, whereas juvenile fish only occurred in non-reef habitats. Contrary to our initial expectations, analysis of length-at-age revealed that growth rates were highest on coral reefs and not within nursery habitats. Survival rates in tethering trials were 0% for small juvenile fish transplanted to coral reefs and 24–47% in the nurseries. As fish grew, survival rates on coral reefs approached those in non-reef habitats (56 vs. 77–100%, respectively). As such, predation seems to be the primary factor driving across-ecosystem distributions of this fish, and thus the primary reason why mangrove and seagrass habitats function as nursery habitat. Identifying the mechanisms that lead to such distributions is critical to develop appropriate conservation initiatives, identify essential fish habitat, and predict impacts associated with environmental change

Density-Dependence Mediates the Effects of Temperature on Growth of Juvenile Blue Catfish in Nonnative Habitats

The combined effects of conspecific density and climate warming on the vital rates of invasive fish species have not been well studied, but may be important in predicting how successful they will be in the future. We evaluated the effects of temperature and population density on monthly time series of sizes of age-0 Blue Catfish Ictalurus furcatus in the James, York, and Rappahannock River subestuaries (defined here as tidally influenced bodies of water that feed into the Chesapeake Bay) from 1996 to 2017, using growing degree-days (GDDs, °C day) as a measure of thermal time. Our pre- dictive linear mixed-effects model explained 86% of the variation in the length of age-0 Blue Catfish. In addition, it indi- cated a strong positive effect of temperature on the growth rate of age-0 Blue Catfish, with individual fish biomass during warm years up to 63% higher than during cool years. Growth rate was influenced negatively by the abundance of age-0 and older fish, resulting in at least fourfold differences in the predicted biomass of Blue Catfish by the end of the first year of life depending on conspecific density. We also observed regional differences in the growth rates of Blue Catfish in the three subestuaries we examined; although growth occurred in all subestuaries, growth was highest for the Rappahannock River population even though this river accumulated the fewest GDDs. Rising water temperatures due to global climate change will likely increase the growth rate of age-0 Blue Catfish in the Chesapeake Bay region, potentially intensifying the negative impacts of this invasive species on the ecology of Chesapeake Bay. However, individual populations respond differently to warming temperatures, and thus, potential increases in the growth rate of age-0 Blue Catfish may be par- tially offset by local conditions that may serve to limit growth

(wileyonlinelibrary.com) DOI: 10.1002/rra.1370 RIVER IMPOUNDMENT AND SUNFISH GROWTH

Impoundment of rivers by dams is widespread and one of the most devastating anthropogenic impacts to freshwater environments. Linking theoretical and applied research on river impoundment requires an improved capacity for predicting how varying degrees of impoundment affects a range of species. Here, growth of 14 North American sunfish species resilient to river impoundment was compared in rivers versus impoundments. Growth response to river impoundment varied widely, but consistently among taxa: five species (shadow bass, rock bass, flier, redbreast sunfish and green sunfish) showed significantly higher growth in riverine ecosystems, four species (largemouth bass, smallmouth bass, spotted bass and longear sunfish) showed significantly higher growth in impounded ecosystems, and five species (bluegill, black crappie, white crappie, redear sunfish and warmouth) displayed no difference in growth between rivers and impoundments. Furthermore, significant linear models were developed for predicting growth of two species (largemouth bass, R 2 0.75 and warmouth, R 2 0.44) based on a physiographically specific index of reservoir retention time. For another species (white crappie), growth could not be predicted by the retention time index in Central Lowlands rivers (R 2 0.001), but was strongly predicted by this factor in southeastern Coastal Plain rivers (R 2 0.76) showing how impacts of impoundment, and prediction of its consequences, can vary across river landscape types. Further analysis of fish growth in response to river impoundment, regulation and fragmentation could greatly enhance conservation biology, restoration ecology and basic land use decisions in riverin

Beyond Kuhnian paradigms: Normal science and theory dependence in ecology

The Structure of Scientific Revolutions by Thomas Kuhn has influenced scientists for decades. It focuses on a progression of science involving periodic, fundamental shifts-revolutions-from one existing paradigm to another. Embedded in this theory is the concept of normal science, that is, scientists work within the confines of established theory, a process often compared to a type of puzzle-solving. This Kuhnian aspect of scientific research has received little attention relative to the much-scrutinized concepts of revolutions and paradigms. We use Kuhn's normal science framework to reflect on the way ecologists practice science. This involves a discussion of how theory dependence influences each step of the scientific method, specifically, how past experiences and existing research frameworks guide the way ecologists acquire knowledge. We illustrate these concepts with ecological examples, including food web structure and the biodiversity crisis, emphasizing that the way one views the world influences how that person engages in scientific research. We conclude with a discussion of how Kuhnian ideas inform ecological research at practical levels, such as influences on grant funding allocation, and we make a renewed call for the inclusion of philosophical foundations of ecological principles in pedagogy. By studying the processes and traditions of how science is carried out, ecologists can better direct scientific insight to address the world's most pressing environmental problems

Classifying California’s stream thermal regimes for cold-water conservation

Stream temperature science and management is rapidly shifting from single-metric driven approaches to multi-metric, thermal regime characterizations of streamscapes. Given considerable investments in recovery of cold-water fisheries (e.g., Pacific salmon and other declining native species), understanding where cold water is likely to persist, and how cold-water thermal regimes vary, is critical for conservation. California's unique position at the southern end of cold-water ecosystems in the northern hemisphere, variable geography and hydrology, and extensive flow regulation requires a systematic approach to thermal regime classification. We used publicly available, long-term (> 8 years) stream temperature data from 77 sites across California to model their thermal regimes, calculate three temperature metrics, and use the metrics to classify each regime with an agglomerative nesting algorithm. Then, we assessed the variation in each class and considered underlying physical or anthropogenic factors that could explain differences between classes. Finally, we considered how different classes might fit existing criteria for cool- or cold-water thermal regimes, and how those differences complicate efforts to manage stream temperature through regulation. Our results demonstrate that cool- and cold-water thermal regimes vary spatially across California. Several salient findings emerge from this study. Groundwater-dominated streams are a ubiquitous, but as yet, poorly explored class of thermal regimes. Further, flow regulation below dams imposes serial discontinuities, including artificial thermal regimes on downstream ecosystems. Finally, and contrary to what is often assumed, California reservoirs do not contain sufficient cold-water storage to replicate desirable, reach-scale thermal regimes. While barriers to cold-water conservation are considerable and the trajectory of cold-water species towards extinction is dire, protecting reaches that demonstrate resilience to climate warming remains worthwhile

Correction: Classifying California’s stream thermal regimes for cold-water conservation

[This corrects the article DOI: 10.1371/journal.pone.0256286.]

Correction: Classifying California's stream thermal regimes for cold-water conservation.

[This corrects the article DOI: 10.1371/journal.pone.0256286.]

Hindcasting Historical Breeding Conditions for an Endangered Salamander in Ephemeral Wetlands of the Southeastern USA: Implications of Climate Change.

The hydroperiod of ephemeral wetlands is often the most important characteristic determining amphibian breeding success, especially for species with long development times. In mesic and wet pine flatwoods of the southeastern United States, ephemeral wetlands were a common landscape feature. Reticulated flatwoods salamanders (Ambystoma bishopi), a federally endangered species, depend exclusively on ephemeral wetlands and require at least 11 weeks to successfully metamorphose into terrestrial adults. We empirically modeled hydroperiod of 17 A. bishopi breeding wetlands by combining downscaled historical climate-model data with a recent 9-year record (2006-2014) of observed water levels. Empirical models were subsequently used to reconstruct wetland hydrologic conditions from 1896-2014 using the downscaled historical climate datasets. Reconstructed hydroperiods for the 17 wetlands were highly variable through time but were frequently unfavorable for A. bishopi reproduction (e.g., only 61% of years, using a conservative estimate of development time [12 weeks], were conducive to larval development and metamorphosis). Using change-point analysis, we identified significant shifts in average hydroperiod over the last century in all 17 wetlands. Mean hydroperiods were shorter in recent years than at any other point since 1896, and thus less suitable for A. bishopi reproduction. We suggest that climate change will continue to impact the reproductive success of flatwoods salamanders and other ephemeral wetland breeders by reducing the number of years these wetlands have suitable hydroperiods. Consequently, we emphasize the importance of conservation and management for mitigating other forms of habitat degradation, especially maintenance of high quality breeding sites where reproduction can occur during appropriate environmental conditions

Behavioral cues enable native fishes to exit a California floodplain while leaving non‐native fishes behind

Abstract Floodplains are highly productive environments that provide critical rearing habitat and increased growth for diverse native fishes, including juvenile Chinook salmon (Oncorhynchus tshawytscha). Yet, stranding during the flood recession is a potential negative outcome in restored ecosystems where environmental cues are not always present as they were under historical conditions. Outmigration cues of native and non‐native fishes from a restored floodplain were evaluated along the Cosumnes River, CA, USA. This river is the only remaining major unregulated river in the Sierra Nevada that flows into the Central Valley. It remains unclear how native and non‐native fishes utilize spatiotemporally heterogeneous habitats in the Cosumnes River; however, a better understanding of these dynamics could yield insight into how degraded river ecosystems in the region could be rehabilitated to benefit native fishes. In 2018 and 2019, daily fyke net surveys of fish assemblages were conducted within the floodplain and in outmigration corridors, along with the collection of environmental data to identify possible cues. Bayesian modeling showed that temperature increases, along with the rate of floodplain drawdown and the average flow over a rolling seven‐day period, were important triggers for cuing native fishes to exit the floodplain. We conclude that the numerous benefits to the aquatic food web and growth of native fishes justify the risk of stranding that floodplain restoration poses, particularly when supplemented with outmigration cues