Fine-scale morphological, genomic, reproductive, and symbiont differences delimit the Caribbean octocorals Plexaura homomalla and P. kükenthali

Octocorals are conspicuous members of coral reefs and deep-sea ecosystems. Yet, species boundaries and taxonomic relationships within this group remain poorly understood, hindering our understanding of this essential component of the marine fauna. We used a multifaceted approach to revisit the systematics of the Caribbean octocorals Plexaura homomalla and Plexaura kükenthali, two taxa that have a long history of taxonomic revisions. We integrated morphological and reproductive analyses with high-throughput sequencing technology to clarify the relationship between these common gorgonians. Although size and shape of the sclerites are significantly different, there is overlap in the distributions making identification based on sclerites alone difficult. Differences in reproductive timing and mode of larval development were detected, suggesting possible mechanisms of pre-zygotic isolation. Furthermore, there are substantial genetic differences and clear separation of the two species in nuclear introns and single-nucleotide polymorphisms obtained from de novo assembled transcriptomes. Despite these differences, analyses with SNPs suggest that hybridization is still possible between the two groups. The two nascent species also differed in their symbiont communities (genus Breviolum) across multiple sampling sites in the Caribbean. Despite a complicated history of taxonomic revisions, our results support the differentiation of P. homomalla and P. kükenthali, emphasizing that integrative approaches are essential for Anthozoan systematics

Sex differences in contaminant concentrations of fish: a synthesis

Abstract A comparison of whole-fish polychlorinated biphenyl (PCB) and total mercury (Hg) concentrations in mature males with those in mature females may provide insights into sex differences in behavior, metabolism, and other physiological processes. In eight species of fish, we observed that males exceeded females in whole-fish PCB concentration by 17 to 43 %. Based on results from hypothesis testing, we concluded that these sex differences were most likely primarily driven by a higher rate of energy expenditure, stemming from higher resting metabolic rate (or standard metabolic rate (SMR)) and higher swimming activity, in males compared with females. A higher rate of energy expenditure led to a higher rate of food consumption, which, in turn, resulted in a higher rate of PCB accumulation. For two fish species, the growth dilution effect also made a substantial contribution to the sex difference in PCB concentrations, although the higher energy expenditure rate for males was still the primary driver. Hg concentration data were available for five of the eight species. For four of these five species, the ratio of PCB concentration in males to PCB concentration in females was substantially greater than the ratio of Hg concentration in males to Hg concentration in females. In sea lamprey (Petromyzon marinus), a very primitive fish, the two ratios were nearly identical. The most plausible explanation for this pattern was that certain androgens, such as testosterone and 11-ketotestosterone, enhanced Hg-elimination rate in males. In contrast, long-term elimination of PCBs is negligible for both sexes. According to this explanation, males not only ingest Hg at a higher rate than females but also eliminate Hg at a higher rate than females, in fish species other than sea lamprey. Male sea lamprey do not possess either of the above-specified androgens. These apparent sex differences in SMRs, activities, and Hg-elimination rates in teleost fishes may also apply, to some degree, to higher vertebrates including humans. Our synthesis findings will be useful in (1) developing sex-specific bioenergetics models for fish, (2) developing sex-specific risk assessment models for exposure of humans and wildlife to contaminants, and (3) refining Hg mass balance models for fish and higher vertebrates.http://deepblue.lib.umich.edu/bitstream/2027.42/134637/1/13293_2016_Article_90.pd

Atmospheric mercury and fine particulate matter in coastal New England : implications for mercury and trace element sources in the northeastern United States

This paper is not subject to U.S. copyright. The definitive version was published in Atmospheric Environment 79 (2013): 760–768, doi:10.1016/j.atmosenv.2013.07.031.Intensive sampling of ambient atmospheric fine particulate matter was conducted at Woods Hole, Massachusetts over a four-month period from 3 April to 29 July, 2008, in conjunction with year-long deployment of the USGS Mobile Mercury Lab. Results were obtained for trace elements in fine particulate matter concurrently with determination of ambient atmospheric mercury speciation and concentrations of ancillary gasses (SO2, NOx, and O3). For particulate matter, trace element enrichment factors greater than 10 relative to crustal background values were found for As, Bi, Cd, Cu, Hg, Pb, Sb, V, and Zn, indicating contribution of these elements by anthropogenic sources. For other elements, enrichments are consistent with natural marine (Na, Ca, Mg, Sr) or crustal (Ba, Ce, Co, Cs, Fe, Ga, La, Rb, Sc, Th, Ti, U, Y) sources, respectively. Positive matrix factorization was used together with concentration weighted air-mass back trajectories to better define element sources and their locations. Our analysis, based on events exhibiting the 10% highest PM2.5 contributions for each source category, identifies coal-fired power stations concentrated in the U.S. Ohio Valley, metal smelting in eastern Canada, and marine and crustal sources showing surprisingly similar back trajectories, at times each sampling Atlantic coastal airsheds. This pattern is consistent with contribution of Saharan dust by a summer maximum at the latitude of Florida and northward transport up the Atlantic Coast by clockwise circulation of the summer Bermuda High. Results for mercury speciation show diurnal production of RGM by photochemical oxidation of Hg° in a marine environment, and periodic traverse of the study area by correlated RGM-SO2(NOx) plumes, indicative of coal combustion sources.We acknowledge support of the USGS Toxic Substances Hydrology Program, the USGS Energy Resources Program, the National Science Foundation Small Grants for Exploratory Research Program, and for initial support, the USGS Mendenhall Postdoctoral Program

Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication

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Source apportionment of atmospheric trace gases and particulate matter: comparison of log-ratio and traditional approaches

In this paper we compare multivariate methods using both traditional approaches, which ignore issues of closure and provide relatively simple methods to deal with censored or missing data, and log-ratio methods to determine the sources of trace constituents in the atmosphere. The data set examined was collected from April to July 2008 at a sampling site near Woods Hole, Massachusetts, along the northeastern United States Atlantic coastline. The data set consists of trace gas mixing ratios (O3, SO2, NOx, elemental mercury [Hgo], and reactive gaseous mercury [RGM]), and concentrations of trace elements in fine (<2.5 μm) particulate matter (Al, As, Ba, Ca, Cd, Ce, Co, Cs, Fe, Ga, Hg, K, La, Mg, Mn, Na, P, Pb, Rb, Sb, Sr, Th, Ti, V, Y, and Zn) with varying percentages of censored values for each species. The data were separated into two subcompositions: s1, which is comprised by RGM and particulate Hg (HgP), which are both highly censored; and s2 which includes all of the trace elements associated with particulate matter except Hg, and the trace gases O3, SO2, NOx, and Hgo. Principal factor analysis (PFA) was successful in determining the primary sources for constituents in s2 using both traditional and log-ratio approaches. Using the traditional approach, regression between factor scores and RGM and particulate Hg concentrations suggested that none of the sources identified during PFA led to positive contributions of either reactive mercury compound. This finding is counter to most conventional thinking and is likely specious, resulting from removal of censored data (up to >80% of the entire dataset) during the analysis. Log-ratio approaches to find relationships between constituents comprising s2 with RGM and HgP (i.e., s1) focused on log-ratio correlation and regression analyses of alr-transformed data, using Al as the divisor. Regression models accounted for large fractions of the variance in concentrations of the two reactive mercury species and generally agreed with conceptualizations about the formation and behavior of these species. An analysis of independence between the subcompositions demonstrated that the behavior of the two constituents comprising s1 (i.e., RGM and HgP) is dependent on changes in s2. Our findings suggest that although problems related to closure are largely unknown or ignored in the atmospheric sciences, much insight can be gleaned from the application of log-ratio methods to atmospheric chemistry data

Otolith microchemistry and diadromy in Patagonian river fishes

Coastal habitats in Chile are hypothesized to support a number of diadromous fish species. The objective of this study was to document migratory life histories of native galaxiids and introduced salmonids from a wide latitudinal range in Chilean Patagonia (39–48°S). Otolith microchemistry data were analysed using a recursive partitioning approach to test for diadromy. Based on annular analysis of Sr:Ca ratios, a diadromous life history was suggested for populations of native Aplochiton taeniatus, A. marinus, and Galaxias maculatus. Lifetime residency in freshwater was suggested for populations of A. zebra and G. platei. Among introduced salmonids, populations of Oncorhynchus tshawytscha and O. kisutch exhibited patterns consistent with anadromy, whereas the screened population of O. mykiss appeared restricted to freshwater. Salmo trutta exhibited variable patterns suggesting freshwater residency and possibly anadromy in one case. The capacity and geographic scope of hydropower development is increasing and may disrupt migratory routes of diadromous fishes. Identification of diadromous species is a critical first step for preventing their loss due to hydropower development

Sediment-Water Interactions Affecting Dissolved-Mercury Distributions in Camp Far West Reservoir, California

Field and laboratory studies were conducted in April and November 2002 to provide the first direct measurements of the benthic flux of dissolved (0.2-micrometer filtered) mercury species (total and methylated forms) between the bottom sediment and water column at three sampling locations within Camp Far West Reservoir, California: one near the Bear River inlet to the reservoir, a second at a mid-reservoir site of comparable depth to the inlet site, and the third at the deepest position in the reservoir near the dam (herein referred to as the inlet, midreservoir and near-dam sites, respectively; Background, Fig. 1). Because of interest in the effects of historic hydraulic mining and ore processing in the Sierra Nevada foothills just upstream of the reservoir, dissolved-mercury species and predominant ligands that often control the mercury speciation (represented by dissolved organic carbon, and sulfides) were the solutes of primary interest. Benthic flux, sometimes referred to as internal recycling, represents the transport of dissolved chemical species between the water column and the underlying sediment. Because of the affinity of mercury to adsorb onto particle surfaces and to form insoluble precipitates (particularly with sulfides), the mass transport of mercury in mining-affected watersheds is typically particle dominated. As these enriched particles accumulate at depositional sites such as reservoirs, benthic processes facilitate the repartitioning, transformation, and transport of mercury in dissolved, biologically reactive forms (dissolved methylmercury being the most bioavailable for trophic transfer). These are the forms of mercury examined in this study. In contrast to typical scientific manuscripts, this report is formatted in a pyramid-like structure to serve the needs of diverse groups who may be interested in reviewing or acquiring information at various levels of technical detail (Appendix 1). The report enables quick transitions between the initial summary information (figuratively at the top of the pyramid) and the later details of methods or results (figuratively towards the base of the pyramid) using hyperlinks to supporting figures and tables, and an electronically linked Table of Contents. During two sampling events, two replicate sediment cores (Coring methods; Fig. 2) from each of three reservoir locations (Fig. 1) were used in incubation experiments to provide flux estimates and benthic biological characterizations. Incubation of these cores provided “snapshots” of solute flux across the sediment-water interface in the reservoir, under benthic, environmental conditions representative of the time and place of collection. Ancillary data, including nutrient and ligand fluxes, were gathered to provide a water-quality framework from which to compare the results for mercury

An airblast hazard simulation engine for block caving sites

In this paper, a weakly compressible Lattice Boltzmann code is coupled with a realistic shape Discrete Element algorithm to create a simulation software to estimate the airspeed happening at airblast events in three dimensions. In an airblast event, air is compressed between falling rocks and the muckpile when the block caving method is used, creating potential hazardous air gusts compromising the safety of personnel and equipment. This work shows how the coupled code is capable of reproducing the key physical layers involved in this phenomenon such as the airspeeds attained by falling bodies in funnel geometries. After some validation examples, the code is used to evaluate the effect of the underground mine geometrical parameters on the potential airspeed. These examples show the potential of the software to be used by mining engineers to estimate accurately the impact of an airblast event

Homogenization and seismic assessment : review and recent trends

The mechanics of masonry structures has been for long underdeveloped in comparison with other fields of knowledge. Presently, non-linear analysis is a popular field in masonry research and advanced computer codes are available for researchers and practitioners. The chapter presents a discussion of masonry behaviour and clarifies how to obtain the non-linear data required by the computations. The chapter also addresses different homogenisation techniques available in the literature in the linear and rigid-plastic case, aiming at defining a catalogue and at discussing the advantages and disadvantages of the different approaches. Special attention is given to stress assumed models based either on a polynomial expansion of the micro-stress field or in the discretization of the unit cell by means of a few constant stress finite elements CST with joints reduced to interfaces. Finally, the aspects of seismic assessment are presented and case studies involving the use of macro-block analysis, static (pushover) analysis and time integration analysis are discussed.(undefined