Anisotropy in the helicity modulus of a quantum 3D XY-model: application to YBCO

We present a variational study of the helicity moduli of an anisotropic quantum three-dimensional (3D) XY-model of YBCO in superconducting state. It is found that both the ab-plane and the c-axis helicity moduli, which are proportional to the inverse square of the corresponding magnetic field penetration depth, vary with temperature T as T to the fourth power in the zero temperature limit. Moreover, the c-axis helicity modulus drops with temperature much faster than the ab-plane helicity modulus because of the weaker Josephson couplings along the c-axis compared to those along the ab-plane. These findings are in disagreement with the experiments on high quality samples of YBCO.Comment: 9 pages, 1 figur

Anisotropy in the helicity modulus of a 3D XY-model: application to YBCO

We present a Monte Carlo study of the helicity moduli of an anisotropic classical three-dimensional (3D) XY-model of YBCO in superconducting state. It is found that both the ab-plane and the c-axis helicity moduli, which are proportional to the inverse square of the corresponding magnetic field penetration depth, vary linearly with temperature at low temperatures. The result for the c-axis helicity modulus is in disagreement with the experiments on high quality samples of YBCO. Thus we conclude that purely classical phase fluctuations of the superconducting order parameter cannot account for the observed c-axis electrodynamics of YBCO.Comment: 7 pages, 1 figur

Casimir force on interacting Bose-Einstein condensate

We have presented an analytic theory for the Casimir force on a Bose-Einstein condensate (BEC) which is confined between two parallel plates. We have considered Dirichlet boundary conditions for the condensate wave function as well as for the phonon field. We have shown that, the condensate wave function (which obeys the Gross-Pitaevskii equation) is responsible for the mean field part of Casimir force, which usually dominates over the quantum (fluctuations) part of the Casimir force.Comment: Accepted in Journal of Physics B: Atomic, Molecular and Optical Physic

Spin dependent observable effect for free particles using the arrival time distribution

The mean arrival time of free particles is computed using the quantum probability current. This is uniquely determined in the non-relativistic limit of Dirac equation, although the Schroedinger probability current has an inherent non-uniqueness. Since the Dirac probability current involves a spin-dependent term, an arrival time distribution based on the probability current shows an observable spin-dependent effect, even for free particles. This arises essentially from relativistic quantum dynamics, but persists even in the non-relativistic regime.Comment: 5 Latex pages, 2.eps figures; discussions sharpened and references added; accepted for publication in Physical Review

Short-term change in growth of uterine leiomyoma: tumor growth spurts

To describe the short-term changes in growth of uterine leiomyomata (fibroids)

Paradigm of tunable clustering using binarization of consensus partition matrices (Bi-CoPaM) for gene discovery

Copyright @ 2013 Abu-Jamous et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Clustering analysis has a growing role in the study of co-expressed genes for gene discovery. Conventional binary and fuzzy clustering do not embrace the biological reality that some genes may be irrelevant for a problem and not be assigned to a cluster, while other genes may participate in several biological functions and should simultaneously belong to multiple clusters. Also, these algorithms cannot generate tight clusters that focus on their cores or wide clusters that overlap and contain all possibly relevant genes. In this paper, a new clustering paradigm is proposed. In this paradigm, all three eventualities of a gene being exclusively assigned to a single cluster, being assigned to multiple clusters, and being not assigned to any cluster are possible. These possibilities are realised through the primary novelty of the introduction of tunable binarization techniques. Results from multiple clustering experiments are aggregated to generate one fuzzy consensus partition matrix (CoPaM), which is then binarized to obtain the final binary partitions. This is referred to as Binarization of Consensus Partition Matrices (Bi-CoPaM). The method has been tested with a set of synthetic datasets and a set of five real yeast cell-cycle datasets. The results demonstrate its validity in generating relevant tight, wide, and complementary clusters that can meet requirements of different gene discovery studies.National Institute for Health Researc

Critical Casimir force in the superfluid phase: effect of fluctuations

We have considered the critical Casimir force on a $^4$He film below and above the bulk $\lambda$ point. We have explored the role of fluctuations around the mean field theory in a perturbative manner, and have substantially improved the mean field result of Zandi et al [Phys. Rev. E {\bf 76}, 030601(R) (2007)]. The Casimir scaling function obtained by us approaches a universal constant ($-\frac{\zeta(3)}{8\pi}$) for $T\lesssim 2.13~\text{K}$.Comment: The term $\frac{1}{4b}\xi_0^4k_BT_\lambda$ at the Fig.2-caption in the published version should be read as $\frac{1}{4b\xi_0^4k_BT_\lambda}

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy

Background: Epigenetic modifications, such as DNA methylation, due to in utero exposures may play a critical role in early programming for childhood and adult illness. Maternal smoking is a major risk factor for multiple adverse health outcomes in children, but the underlying mechanisms are unclear. Objective: We investigated epigenome-wide methylation in cord blood of newborns in relation to maternal smoking during pregnancy. Methods: We examined maternal plasma cotinine (an objective biomarker of smoking) measured during pregnancy in relation to DNA methylation at 473, 844 CpG sites (CpGs) in 1, 062 newborn cord blood samples from the Norwegian Mother and Child Cohort Study (MoBa) using the Infinium HumanMethylation450 BeadChip (450K). Results: We found differential DNA methylation at epigenome-wide statistical significance (p-value < 1.06 × 10–7) for 26 CpGs mapped to 10 genes. We replicated findings for CpGs in AHRR, CYP1A1, and GFI1 at strict Bonferroni-corrected statistical significance in a U.S. birth cohort. AHRR and CYP1A1 play a key role in the aryl hydrocarbon receptor signaling pathway, which mediates the detoxification of the components of tobacco smoke. GFI1 is involved in diverse developmental processes but has not previously been implicated in responses to tobacco smoke. Conclusions: We identified a set of genes with methylation changes present at birth in children whose mothers smoked during pregnancy. This is the first study of differential methylation across the genome in relation to maternal smoking during pregnancy using the 450K platform. Our findings implicate epigenetic mechanisms in the pathogenesis of the adverse health outcomes associated with this important in utero exposure.publishedVersio

Design and realization of an inherently gain flattened erbium doped fiber amplifier

We report design and results on realization of an asymmetric co-axial dual-core fiber for an inherently gain flattened EDFA with median gains ≥ 28 dB and gain excursion within ± 2 dB across the C-band