13,189 research outputs found
Increased human pathogenic potential of Escherichia coli from polymicrobial urinary tract infections in comparison to isolates from monomicrobial culture samples
The current diagnostic standard procedure outlined by the Health Protection Agency for urinary tract infections (UTIs) in clinical laboratories does not report bacteria isolated from samples containing three or more different bacterial species. As a result many UTIs go unreported and untreated, particularly in elderly patients, where polymicrobial UTI samples are especially prevalent. This study reports the presence of the major uropathogenic species in mixed culture urine samples from elderly patients, and of resistance to front-line antibiotics, with potentially increased levels of resistance to ciprofloxacin and trimethoprim. Most importantly, the study highlights that Escherichia coli present in polymicrobial UTI samples are statistically more invasive (P<0.001) in in vitro epithelial cell infection assays than those isolated from monomicrobial culture samples. In summary, the results of this study suggest that the current diagnostic standard procedure for polymicrobial UTI samples needs to be reassessed, and that E. coli present in polymicrobial UTI samples may pose an increased risk to human health
Counterions at Charged Cylinders: Criticality and universality beyond mean-field
The counterion-condensation transition at charged cylinders is studied using
Monte-Carlo simulation methods. Employing logarithmically rescaled radial
coordinates, large system sizes are tractable and the critical behavior is
determined by a combined finite-size and finite-ion-number analysis. Critical
counterion localization exponents are introduced and found to be in accord with
mean-field theory both in 2 and 3 dimensions. In 3D the heat capacity shows a
universal jump at the transition, while in 2D, it consists of discrete peaks
where single counterions successively condense.Comment: 4 pages, 3 figures; submitted to Phys. Rev. Lett. (2005
Gene loss and lineage specific restriction-modification systems associated with niche differentiation in the Campylobacter jejuni Sequence Type 403 clonal complex
Campylobacter jejuni is a highly diverse species of bacteria commonly associated with infectious intestinal disease of humans and zoonotic carriage in poultry, cattle, pigs, and other animals. The species contains a large number of distinct clonal complexes that vary from host generalist lineages commonly found in poultry, livestock, and human disease cases to host-adapted specialized lineages primarily associated with livestock or poultry. Here, we present novel data on the ST403 clonal complex of C. jejuni, a lineage that has not been reported in avian hosts. Our data show that the lineage exhibits a distinctive pattern of intralineage recombination that is accompanied by the presence of lineage-specific restriction-modification systems. Furthermore, we show that the ST403 complex has undergone gene decay at a number of loci. Our data provide a putative link between the lack of association with avian hosts of C. jejuni ST403 and both gene gain and gene loss through nonsense mutations in coding sequences of genes, resulting in pseudogene formation
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Cytolethal distending toxin (CDT)-negative Campylobacter jejuni strains and anti-CDT neutralising antibodies induced during human infection but not chicken colonisation
The cytolethal distending toxin (CDT) of Campylobacter jejuni was detectable, using an in vitro assay, in most but not all of 24 strains tested. The reason for the absence of toxin activity in these naturally occurring CDT-negative C. jejuni strains was then investigated at the genetic level. CDT is encoded by three highly conserved genes, cdtA, -B, and -C. In the CDT-negative strains, two types of mutation were identified. The CDT activities of C. jejuni strains possessing both types of mutation were successfully complemented with the functional genes of C. jejuni 11168. The first type of mutation comprised a 667-bp deletion across cdtA and cdtB and considerable degeneration in the remainder of the cdt locus. Using a PCR technique to screen for this deletion, this mutation occurred in fewer than 3% of 147 human, veterinary, and environmental strains tested. The second type of mutation involved at least four nonsynonymous nucleotide changes, but only the replacement of proline with serine at CdtB position 95 was considered important for CDT activity. This was confirmed by site-directed mutagenesis. This type of mutation also occurred in fewer than 3% of strains as determined using a LightCycler biprobe assay. The detection of two CDT-negative clinical isolates raised questions about the role of CDT in some cases of human campylobacteriosis. To determine if anti-CDT antibodies are produced in human infection, a toxin neutralization assay was developed and validated using rabbit antisera. Pooled human sera from infected patients neutralized the toxin, indicating expression and immunogenicity during infection. However, no neutralizing antibodies were detected in colonized chickens despite the expression of CDT in the avian gut as indicated by reverse transcription-PCR
Scaling and Universality in the Counterion-Condensation Transition at Charged Cylinders
We address the critical and universal aspects of counterion-condensation
transition at a single charged cylinder in both two and three spatial
dimensions using numerical and analytical methods. By introducing a novel
Monte-Carlo sampling method in logarithmic radial scale, we are able to
numerically simulate the critical limit of infinite system size (corresponding
to infinite-dilution limit) within tractable equilibration times. The critical
exponents are determined for the inverse moments of the counterionic density
profile (which play the role of the order parameters and represent the inverse
localization length of counterions) both within mean-field theory and within
Monte-Carlo simulations. In three dimensions (3D), correlation effects
(neglected within mean-field theory) lead to an excessive accumulation of
counterions near the charged cylinder below the critical temperature
(condensation phase), while surprisingly, the critical region exhibits
universal critical exponents in accord with the mean-field theory. In two
dimensions (2D), we demonstrate, using both numerical and analytical
approaches, that the mean-field theory becomes exact at all temperatures
(Manning parameters), when number of counterions tends to infinity. For finite
particle number, however, the 2D problem displays a series of peculiar singular
points (with diverging heat capacity), which reflect successive de-localization
events of individual counterions from the central cylinder. In both 2D and 3D,
the heat capacity shows a universal jump at the critical point, and the energy
develops a pronounced peak. The asymptotic behavior of the energy peak location
is used to locate the critical temperature, which is also found to be universal
and in accordance with the mean-field prediction.Comment: 31 pages, 16 figure
Measurement of correlations between low-frequency vibrational modes and particle rearrangements in quasi-two-dimensional colloidal glasses
We investigate correlations between low-frequency vibrational modes and
rearrangements in two-dimensional colloidal glasses composed of thermosensitive
microgel particles which readily permit variation of sample packing fraction.
At each packing fraction, the particle displacement covariance matrix is
measured and used to extract the vibrational spectrum of the "shadow" colloidal
glass (i.e., the particle network with the same geometry and interactions as
the sample colloid but absent damping). Rearrangements are induced by
successive, small reductions in packing fraction. The experimental results
suggest that low-frequency quasi-localized phonon modes in colloidal glasses,
i.e., modes that present low energy barriers for system rearrangements, are
spatially correlated with rearrangements in this thermal system
Mass-to-Radius Ratio for the Millisecond Pulsar J0437-4715
Properties of X-ray radiation emitted from the polar caps of a radio pulsar
depend not only on the cap temperature, size, and position, but also on the
surface chemical composition, magnetic field, and neutron star's mass and
radius. Fitting the spectra and the light curves with neutron star atmosphere
models enables one to infer these parameters. As an example, we present here
results obtained from the analysis of the pulsed X-ray radiation of a nearby
millisecond pulsar J0437-4715. In particular, we show that stringent
constraints on the mass-to-radius ratio can be obtained if orientations of the
magnetic and rotation axes are known, e.g., from the radio polarization data.Comment: 2 figures, aasms4.sty; accepted for publication in ApJLetter
A five year record of high-frequency in situ measurements of non-methane hydrocarbons at Mace Head, Ireland
Continuous high-frequency in situ measurements of a range of non-methane hydrocarbons have been made at Mace Head since January 2005. Mace Head is a background Northern Hemispheric site situated on the eastern edge of the Atlantic. Five year measurements (2005–2009) of six C<sub>2</sub>–C<sub>5</sub> non-methane hydrocarbons have been separated into baseline Northern Hemispheric and European polluted air masses, among other sectors. Seasonal cycles in baseline Northern Hemispheric air masses and European polluted air masses arriving at Mace Head have been studied. Baseline air masses show a broad summer minima between June and September for shorter lived species, longer lived species show summer minima in July/August. All species displayed a winter maxima in February. European air masses showed baseline elevated mole fractions for all non-methane hydrocarbons. Largest elevations (of up to 360 ppt for ethane maxima) from baseline data were observed in winter maxima, with smaller elevations observed during the summer. Analysis of temporal trends using the Mann-Kendall test showed small (<6 % yr<sup>&minus;1</sup>) but statistically significant decreases in the butanes and <i>i</i>-pentane between 2005 and 2009 in European air. No significant trends were found for any species in baseline air
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