Covariant approach to equilibration in effective field theories

The equilibration of two coupled reservoirs is studied using a Green function approach which is suitable for future development with the closed time path method. The problem is solved in two parameterizations, in order to demonstrate the non-trivial issues of parameterization in both the intermediate steps and the interpretation of physical quantities. We use a covariant approach to find self-consistent solutions for the statistical distributions as functions of time. We show that by formally introducing covariant connections, one can rescale a slowly varying non-equilibrium theory so that it appears to be an equilibrium one, for the purposes of calculation. We emphasize the importance of properly tracking variable redefinitions in order to correctly interpret physical quantities.Comment: 11 pages, Late

The high partial wave phenomenon of spin changing atomic transitions

The collisional transition between two highly excited atomic states with different spin is investigated theoretically. Taking helium-like n1S − n3P as an example, it is found that the transition is driven in the highly ion-ized Fe ion purely by exchange, and the cross section becomes increasingly dominated by partial waves of high orbital angular momentum as the scattering energy increases. Whereas for the near-neutral Li ion the transition is dominated by channel coupling in low partial waves. Analytical bench-marks and numerical methods are developed for the accurate calculation of the exchange integral at high angular momentum. It is shown how the partial wave and energy dependence of the collision strength for high n spin changing transitions in the highly ionized ion is related to the overlap of the extended atomic orbitals.</p

Three undescribed pathogenic Phytophthora taxa from the south-west of Western Australia

The Phytophthora culture collection of the Vegetation Health Service of the Department of Environment and Conservation of Western Australia (WA) has been re-evaluated using DNA sequencing (Burgess et al., 2009). This has revealed many undescribed taxa previously classified as known morpho-species, one of which has recently been described as P. multivora (Scott et al., 2009). The aim of this study was to describe three of these taxa, all of which occur in WA native ecosystems. They were compared with both the morphological species to which they are most similar and their closest phylogenetic relatives. In addition, the pathogenicity of these taxa was assessed in glasshouse trials

Consequences of Zeeman Degeneracy for van der Waals Blockade between Rydberg Atoms

We analyze the effects of Zeeman degeneracies on the long-range interactions between like Rydberg atoms, with particular emphasis on applications to quantum information processing using van der Waals blockade. We present a general analysis of how degeneracies affect the primary error sources in blockade experiments, emphasizing that blockade errors are sensitive primarily to the weakest possible atom-atom interactions between the degenerate states, not the mean interaction strength. We present explicit calculations of the van der Waals potentials in the limit where the fine-structure interaction is large compared to the atom-atom interactions. The results are presented for all potential angular momentum channels invoving s, p, and d states. For most channels there are one or more combinations of Zeeman levels that have extremely small dipole-dipole interactions and are therefore poor candidates for effective blockade experiments. Channels with promising properties are identified and discussed. We also present numerical calculations of Rb and Cs dipole matrix elements and relevant energy levels using quantum defect theory, allowing for convenient quantitative estimates of the van der Waals interactions to be made for principal quantum numbers up to 100. Finally, we combine the blockade and van der Waals results to quantitatively analyze the angular distribution of the blockade shift and its consequence for angular momentum channels and geometries of particular interest for blockade experiments with Rb.Comment: 16 figure

Toxoplasma gondii profilin does not stimulate an innate immune response through bovine or human TLR5

Toxoplasma gondii is responsible for one of the most prevalent infections in people. T. gondii profilin (TgPr) is a protein integral to parasite movement and cellular invasion. Murine TLR has been described to bind TgPr. Furthermore, more recently, human TLR5 has been described to recognise recombinant TgPr, as well as bacterial flagellin. In addition to infections in humans, T. gondii infects farm animals, but little information is available about its innate recognition. We aimed to investigate whether, similarly to their human orthologue, bovine and porcine TLR5 could also be stimulated by TgPr by using a combination of reporter cell lines expressing full length TLR5 from each species as well as primary cells. Although human and bovine TLR5-transfected cells responded to flagellin, no response was detected upon stimulation with profilin. Furthermore, TgPr failed to elicit IL-6 secretion in human peripheral blood mononuclear cells and CD14þ monocytes. In contrast, exposure of RAW cells, known to express TLR11 to TgPr, slightly increased the IL-6 response. Our data cast doubts on the possibility that profilin is a specific ligand for human TLR5 and bovine TLR5. This leaves the immunogenic properties of this potential target antigen uncharacterised outside of the murine system

Quasiperpendicular high Mach number Shocks

Shock waves exist throughout the universe and are fundamental to understanding the nature of collisionless plasmas. Reformation is a process, driven by microphysics, which typically occurs at high Mach number supercritical shocks. While ongoing studies have investigated this process extensively both theoretically and via simulations, their observations remain few and far between. In this letter we present a study of very high Mach number shocks in a parameter space that has been poorly explored and we identify reformation using in situ magnetic field observations from the Cassini spacecraft at 10 AU. This has given us an insight into quasi-perpendicular shocks across two orders of magnitude in Alfven Mach number (MA) which could potentially bridge the gap between modest terrestrial shocks and more exotic astrophysical shocks. For the first time, we show evidence for cyclic reformation controlled by specular ion reflection occurring at the predicted timescale of ~0.3 {\tau}c, where {\tau}c is the ion gyroperiod. In addition, we experimentally reveal the relationship between reformation and MA and focus on the magnetic structure of such shocks to further show that for the same MA, a reforming shock exhibits stronger magnetic field amplification than a shock that is not reforming.Comment: Accepted and Published in Physical Review Letters (2015

Systematics of Moduli Stabilization, Inflationary Dynamics and Power Spectrum

We study the scalar sector of type IIB superstring theory compactified on Calabi-Yau orientifolds as a place to find a mechanism of inflation in the early universe. In the large volume limit, one can stabilize the moduli in stages using perturbative method. We relate the systematics of moduli stabilization with methods to reduce the number of possible inflatons, which in turn lead to a simpler inflation analysis. Calculating the order-of-magnitude of terms in the equation of motion, we show that the methods are in fact valid. We then give the examples where these methods are used in the literature. We also show that there are effects of non-inflaton scalar fields on the scalar power spectrum. For one of the two methods, these effects can be observed with the current precision in experiments, while for the other method, the effects might never be observable.Comment: 20 pages, JHEP style; v.2 and v.3: typos fixed, discussion and references adde

Optimized Effective Potentials in Finite Basis Sets

The finite basis optimized effective potential (OEP) method within density functional theory is examined as an ill-posed problem. It is shown that the generation of nonphysical potentials is a controllable manifestation of the use of unbalanced, and thus unsuitable, basis sets. A modified functional incorporating a regularizing smoothness measure of the OEP is introduced. This provides a condition on balanced basis sets for the potential, as well as a method to determine the most appropriate OEP potential and energy from calculations performed with any finite basis set.Comment: 23 pages, 28 figure

Rydberg atom formation in strongly correlated ultracold plasmas

In plasmas at very low temperatures formation of neutral atoms is dominated by collisional three-body recombination, owing to the strong ~ T^(-9/2) scaling of the corresponding recombination rate with the electron temperature T. While this law is well established at high temperatures, the unphysical divergence as T -> 0 clearly suggest a breakdown in the low-temperature regime. Here, we present a combined molecular dynamics-Monte-Carlo study of electron-ion recombination over a wide range of temperatures and densities. Our results reproduce the known behavior of the recombination rate at high temperatures, but reveal significant deviations with decreasing temperature. We discuss the fate of the kinetic bottleneck and resolve the divergence-problem as the plasma enters the ultracold, strongly coupled domain.Comment: 11 pages, 10 figure

Assessing reference conditions and ecological status for lakes using subfossil diatoms

This is the final report to the Environment Agency under an extension to the project, ‘Development of a phytobenthos classification tool for lakes and lochs of UK (DALES– Diatom Assessment of lake and loch ecological status)’ (contract no. SC030103), funded by the Environment Agency (EA).This project forms part of the strategy for the implementation of the European Council Water Framework Directive (WFD), which requires reference conditions to be determined for all water body types including lakes