A Probabilistic Linear Genetic Programming with Stochastic Context-Free Grammar for solving Symbolic Regression problems

Traditional Linear Genetic Programming (LGP) algorithms are based only on the selection mechanism to guide the search. Genetic operators combine or mutate random portions of the individuals, without knowing if the result will lead to a fitter individual. Probabilistic Model Building Genetic Programming (PMB-GP) methods were proposed to overcome this issue through a probability model that captures the structure of the fit individuals and use it to sample new individuals. This work proposes the use of LGP with a Stochastic Context-Free Grammar (SCFG), that has a probability distribution that is updated according to selected individuals. We proposed a method for adapting the grammar into the linear representation of LGP. Tests performed with the proposed probabilistic method, and with two hybrid approaches, on several symbolic regression benchmark problems show that the results are statistically better than the obtained by the traditional LGP.Comment: Genetic and Evolutionary Computation Conference (GECCO) 2017, Berlin, German

Validation and refinement of allometric equations for roots of northern hardwoods

The allometric equations developed by Whittaker et al. (1974. Ecol. Monogr. 44: 233–252), at the Hubbard Brook Experimental Forest have been used to estimate biomass and productivity in northern hardwood forest systems for over three decades. Few other species-specific allometric estimates of belowground biomass are available because of the difficulty in collecting the data, and such equations are rarely validated. Using previously unpublished data from Whittaker’s sampling effort, we extended the equations to predict the root crown and lateral root components for the three dominant species of the northern hardwood forest: American beech (Fagus grandifolia Ehrh.), yellow birch (Betula alleghaniensis Britt), and sugar maple (Acer saccharum Marsh.). We also refined the allometric models by eliminating the use of very small trees for which the original data were unreliable. We validated these new models of the relationship of tree diameter to the mass of root crowns and lateral roots using root mass data collected from 12 northern hardwood stands of varying age in central New Hampshire. These models provide accurate estimates of lateral roots (diameter) in northern hardwood stands \u3e20 years old (mean error 24%–32%). For the younger stands that we studied, allometric equations substantially underestimated observed root biomass (mean error \u3e60%), presumably due to remnant mature root systems from harvested trees supporting young root-sprouted trees

Rates of sustainable forest harvest depend on rotation length and weathering of soil minerals

Abstract Removals of forest biomass in the northeastern US may intensify over the coming decades due to increased demand for renewable energy. For forests to regenerate successfully following intensified harvests, the nutrients removed from the ecosystem in the harvested biomass (including N, P, Ca, Mg, and K) must be replenished through a combination of plant-available nutrients in the soil rooting zone, atmospheric inputs, weathering of primary minerals, biological N fixation, and fertilizer additions. Few previous studies (especially in North America) have measured soil nutrient pools beyond exchangeable cations, but over the long rotations common in this region, other pools which turn over more slowly are important. We constructed nutrient budgets at the rotation time scale for three harvest intensities and compared these with detailed soil data of exchangeable, organic, and primary mineral stocks of in soils sampled in 15 northern hardwood stands developed on granitic till soils in the White Mountain region of New Hampshire, USA. This comparison can be used to estimate how many times each stand might be harvested without diminishing productivity or requiring fertilization. Under 1990s rates of N deposition, N inputs exceeded removals except in the most intensive management scenario considered. Net losses of Ca, K, Mg, and P per rotation were potentially quite severe, depending on the assumptions used.Biologically accelerated soil weathering may explain the lack of observed deficiencies in regenerating forests of the region. Sites differed widely in the long-term nutrient capital available to support additional removals before encountering limitations (e.g., a fourfold difference in available Ca, and a tenfold difference in weatherable Ca). Intensive short-rotation biomass removal could rapidly deplete soil nutrient capital, but traditional long rotations, even under intensive harvesting, are unlikely to induce nutrient depletion in the 21st century. Weatherable P may ultimately limit biomass production on granitic bedrock (in as few as 6 rotations). Understanding whether and how soil weathering rates respond to nutrient demand will be critical to determining long-term sustainability of repeated intensive harvesting over centuries

Soil nitrogen affects phosphorus recycling: foliar resorption and plant–soil feedbacks in a northern hardwood forest

Previous studies have attempted to link foliar resorption of nitrogen and phosphorus to their respective availabilities in soil, with mixed results. Based on resource optimization theory, we hypothesized that the foliar resorption of one element could be driven by the availability of another element. We tested various measures of soil N and P as predictors of N and P resorption in six tree species in 18 plots across six stands at the Bartlett Experimental Forest, New Hampshire, USA. Phosphorus resorption efficiency (P , 0.01) and proficiency (P ¼ 0.01) increased with soil N content to 30 cm depth, suggesting that trees conserve P based on the availability of soil N. Phosphorus resorption also increased with soil P content, which is difficult to explain based on single-element limitation, but follows from the correlation between soil N and soil P. The expected single-element relationships were evident only in the O horizon: P resorption was high where resin-available P was low in the Oe (P , 0.01 for efficiency, P , 0.001 for proficiency) and N resorption was high where potential N mineralization in the Oa was low (P , 0.01 for efficiency and 0.11 for proficiency). Since leaf litter is a principal source of N and P to the O horizon, low nutrient availability there could be a result rather than a cause of high resorption. The striking effect of soil N content on foliar P resorption is the first evidence of multiple-element control on nutrient resorption to be reported from an unmanipulated ecosystem

Dinotefuran and Piperonyl Butoxide Mixture for The Extermination and Prevention of Ctenocephalides Canis and Ctenocephalides Felis Felis In Dogs And Cats

Ctenocephalides canis and Ctenocephalides felis felis are insects which are among the most common ectoparasites of common household dogs and cats. Flea killers have been developed for decades to counter this worldwide pest. It is a never-ending battle because of the continuous genetic resistance presented by the pest. In the present study, we applied a mixture of the pesticide Dinotefuran (26% w/v) and the synergist Piperonyl butoxide (6% w/v) to dogs (Solpreme Dogtrade and cats (Solpreme Cattrade) infested with the fleas via ldquoSpot onrdquo method. The treatment exterminated all of the fleas within 3 days (100%, plt 0.001). Re-infestation after 10 days caused an increase in the number of fleas, yet most of the effect lasted for at least 30 days. Further tests showed that the treatment is safe, water resistant, and has a long shelf life. The development of this novel mixture of substances provides an effective, safe means in the struggle with the continuous development of resistance to pesticides among major skin parasites

Phosphorus limitation of aboveground production in northern hardwood forests

Forest productivity on glacially derived soils with weatherable phosphorus (P) is expected to be limited by nitrogen (N), according to theories of long-term ecosystem development. However, recent studies and model simulations based on resource optimization theory indicate that productivity can be co-limited by N and P. We conducted a full factorial N × P fertilization experiment in 13 northern hardwood forest stands of three age classes in central New Hampshire, USA, to test the hypothesis that forest productivity is co-limited by N and P. We also asked whether the response of productivity to N and P addition differs among species and whether differential species responses contribute to community-level co-limitation. Plots in each stand were fertilized with 30 kg N·ha−1·yr−1, 10 kg P·ha−1·yr−1, N + P, or neither nutrient (control) for four growing seasons. The productivity response to treatments was assessed using per-tree annual relative basal area increment (RBAI) as an index of growth. RBAI responded significantly to P (P = 0.02) but not to N (P = 0.73). However, evidence for P limitation was not uniform among stands. RBAI responded to P fertilization in mid-age (P = 0.02) and mature (P = 0.07) stands, each taken as a group, but was greatest in N-fertilized plots of two stands in these age classes, and there was no significant effect of P in the young stands. Both white birch (Betula papyrifera Marsh.) and beech (Fagus grandifolia Ehrh.) responded significantly to P; no species responded significantly to N. We did not find evidence for N and P co-limitation of tree growth. The response to N + P did not differ from that to P alone, and there was no significant N × P interaction (P = 0.68). Our P limitation results support neither the N limitation prediction of ecosystem theory nor the N and P co-limitation prediction of resource optimization theory, but could be a consequence of long-term anthropogenic N deposition in these forests. Inconsistencies in response to P suggest that successional status and variation in site conditions influence patterns of nutrient limitation and recycling across the northern hardwood forest landscape

Investigation of dust bands from blue ice fields in the Lewis Cliff (Beardmore) area, Antarctica: A progress report

Blue ice fields in Antarctica are well known for their high areal meteorite concentrations. The exact type of accumulation model and the age of the ice is still not well known. Dust bands on blue ice fields may help to clarify some of these problems. Dust, which has been isolated from dust band samples from blue ice areas in the Lewis Cliff/Walcott Neve area (Beardmore region), Antarctica, was studied to determine petrographic characteristics and chemical compositions. One sample has an average grain size of around 0.5mm, and is rather different from the others in its abundances of trace elements. The REE pattern and some other trace element ratios of that sample suggest it is a sediment from the local Beacon Supergroup, which has been scooped up from the ground by ice movement. The other five samples which were investigated have very small grain sizes (20μm), and abundant glass shards. Major element data on the glass shards (and some feldspar crystals, which are also present in the dust band samples) allow the conclusion that they have originated from an alkaline volcano. The chemical composition of the glasses is highly variable, some showing basanitic composition, some showing trachytic or peralkaline K-trachytic composition. The silica vs. sum of alkalis plot shows that the Lewis Cliff samples are different from dust collected at the Allan Hills, but that there is a close similarity with volcanic material from The Pleiades, Northern Victoria Land. The trace element chemistry of all volcanic samples show the characteristic volcanic trace elements, like Ta, W, Sb, Th, and the REE, enriched by a considerable factor. The REE patterns exhibit a prominent negative Eu anomaly, which may be explained by mixing basanites (no Eu anomaly, but steep REE patterns) with K-trachytes and peralkaline K-trachytes (very pronounced negative Eu anomaly). The same components are obvious in major element analyses of individual glass shards, thus each dust band is a mixture of at least three different source materials (which, however, originated from the same volcano in a single eruption). The Pleiades seem to be a likely source for the volcanic debris found in the dust bands at Lewis Cliff

Recovery from disturbance requires resynchronization of ecosystem nutrient cycles

Nitrogen (N) and phosphorus (P) are tightly cycled in most terrestrial ecosystems, with plant uptake more than 10 times higher than the rate of supply from deposition and weathering. This near-total dependence on recycled nutrients and the stoichiometric constraints on resource use by plants and microbes mean that the two cycles have to be synchronized such that the ratio of N:P in plant uptake, litterfall, and net mineralization are nearly the same. Disturbance can disrupt this synchronization if there is a disproportionate loss of one nutrient relative to the other. We model the resynchronization of N and P cycles following harvest of a northern hardwood forest. In our simulations, nutrient loss in the harvest is small relative to postharvest losses. The low N:P ratio of harvest residue results in a preferential release of P and retention of N. The P release is in excess of plant requirements and P is lost from the active ecosystem cycle through secondary mineral formation and leaching early in succession. Because external P inputs are small, the resynchronization of the N and P cycles later in succession is achieved by a commensurate loss of N. Through succession, the ecosystem undergoes alternating periods of N limitation, then P limitation, and eventually co-limitation as the two cycles resynchronize. However, our simulations indicate that the overall rate and extent of recovery is limited by P unless a mechanism exists either to prevent the P loss early in succession (e.g., P sequestration not stoichiometrically constrained by N) or to increase the P supply to the ecosystem later in succession (e.g., biologically enhanced weathering). Our model provides a heuristic perspective from which to assess the resynchronization among tightly cycled nutrients and the effect of that resynchronization on recovery of ecosystems from disturbance

Correct quantum chemistry in a minimal basis from effective Hamiltonians

We describe how to create ab-initio effective Hamiltonians that qualitatively describe correct chemistry even when used with a minimal basis. The Hamiltonians are obtained by folding correlation down from a large parent basis into a small, or minimal, target basis, using the machinery of canonical transformations. We demonstrate the quality of these effective Hamiltonians to correctly capture a wide range of excited states in water, nitrogen, and ethylene, and to describe ground and excited state bond-breaking in nitrogen and the chromium dimer, all in small or minimal basis sets