Bond Orientational Order, Molecular Motion and Free Energy of High Density DNA Mesophases

By equilibrating condensed DNA arrays against reservoirs of known osmotic stress and examining them with several structural probes, it has been possible to achieve a detailed thermodynamic and structural characterization of the change between two distinct regions on the liquid crystalline phase digram: a higher-density hexagonally packed region with long-range bond orientational order in the plane perpendicular to the average molecular direction; and a lower-density cholesteric region with fluid-like positional order. X-rays scattering on highly ordered DNA arrays at high density and with the helical axis oriented parallel to the incoming beam showed a six-fold azimuthal modulation of the first order diffraction peak that reflects the macroscopic bond-orientational order. Transition to the less-dense cholesteric phase through osmotically controlled swelling shows the loss of this bond orientational order that had been expected from the change in optical birefringence patterns and that is consistent with a rapid onset of molecular positional disorder. This change in motion was previously inferred from intermolecular force measurements and is now confirmed by $\rm ^{31}P$ NMR. Controlled reversible swelling and compaction under osmotic stress, spanning a range of densities between $\sim 120$ mg/ml to $\sim 600$ mg/ml, allows measurement of the free energy changes throughout each phase and at the phase transition, essential information for theories of liquid-crystalline states.Comment: 14 pages, 3 figures in gif format available at http://abulafia.mgsl.dcrt.nih.gov/pics.html E-mail: [email protected]

Statistical mechanics of columnar DNA assemblies

Many physical systems can be mapped onto solved or "solvable" models of magnetism. In this work, we have mapped the statistical mechanics of columnar phases of ideally helical rigid DNA -- subject to the earlier found unusual, frustrated pair potential [A. A. Kornyshev and S. Leikin, J. Chem. Phys. 107, 3656 (1997)] -- onto an exotic, unknown variant of the XY model on a fixed or restructurable lattice. Here the role of the 'spin' is played by the azimuthal orientation of the molecules. We have solved this model using a Hartree-Fock approximation, ground state calculations, and finite temperature Monte Carlo simulations. We have found peculiar spin order transitions, which may also be accompanied by positional restructuring, from hexagonal to rhombohedric lattices. Some of these have been experimentally observed in dense columnar aggregates. Note that DNA columnar phases are of great interest in biophysical research, not only because they are a useful in vitro tool for the study of DNA condensation, but also since these structures have been detected in living matter. Within the approximations made, our study provides insight into the statistical mechanics of these systems.Comment: 19 pages, 18 figure

Kentucky Bluegrass Cultivar Study

The National Turfgrass Evaluation Program (NTEP) conducts trials throughout the United States on turfgrass adaptation. This trial was established in September 2011 as a part of the NTEP program. It contains 82 Kentucky bluegrasss cultivars

Perennial Ryegrass Cultivar Study

The National Turfgrass Evaluation Program (NTEP) conducts trials throughout the United States on turfgrass adaptation. This trial was established in September 2010 as a part of the NTEP program. It contains 88 perennial ryegrass cultivars

Converting a Research Green to a Bentgrass Fairway

The project was initiated to convert an existing research putting green to a 007 creeping bentgrass (Agrostis stolonifera) fairway. The previous green was attached to an adjacent fairway, which made it difficult to perform routine maintenance practices. With the addition of the A-4 creeping bentgrass green in the fall of 2011, the square footage of greens height bentgrass would not be affected by the conversion

Controlling Nucleation and Growth of Nanodroplets in Supersonic Nozzles

We present the first results for a new supersonic nozzle that decouples nucleation and droplet growth, and closely controls the supersaturation and temperature during nucleation. We characterize the expansions using pressure trace measurements, and the aerosol properties using light scattering and small angle neutron scattering. We show that when nucleation and droplet growth are separated, the aerosol number density decreases, the average particle size increases, and the aerosol can be more monodisperse than that formed in a conventional nozzle. Under these conditions, we can estimate the nucleation rate J as a function of supersaturation S and temperature T directly from the experimental data. For D2O we find that the nucleation rate is 4.3×1015⩽J/cm−3 s−⩽6.0×1015 at 230.1⩽T/K⩽230.4 and 29.2⩽S⩽32.4

Controlling Nucleation and Growth of Nanodroplets in Supersonic Nozzles

We present the first results for a new supersonic nozzle that decouples nucleation and droplet growth, and closely controls the supersaturation and temperature during nucleation. We characterize the expansions using pressure trace measurements, and the aerosol properties using light scattering and small angle neutron scattering. We show that when nucleation and droplet growth are separated, the aerosol number density decreases, the average particle size increases, and the aerosol can be more monodisperse than that formed in a conventional nozzle. Under these conditions, we can estimate the nucleation rate J as a function of supersaturation S and temperature T directly from the experimental data. For D2O we find that the nucleation rate is 4.3×1015⩽J/cm−3 s−⩽6.0×1015 at 230.1⩽T/K⩽230.4 and 29.2⩽S⩽32.4

H2O–D2O Condensation in A Supersonic Nozzle

We examined the condensation of H2O, D2O, and four intermediate mixtures (20, 40, 60, and 80 mol % D2O) in a supersonic nozzle. Because the physical and chemical properties of protonated and deuterated water are so similar, this system is ideal for studying the change in condensation behavior as a function of condensible composition. In our experiments dilute mixtures of condensible vapor in N2 are expanded from three different stagnation temperatures resulting in a broad range of onset temperatures (190–238 K) and pressures (27–787 kPa). For a fixed stagnation temperature, the partial pressure required to maintain the onset of condensation at a given location or temperature in the nozzle is consistently higher for H2O than for D2O. In contrast, the supersaturation at fixed onset temperature is usually higher for D2O than for H2O and this difference increases toward lower temperature. The partial pressure at onset for the intermediate mixtures varied linearly between the values observed for the pure components in this ideal system

Small Angle Neutron Scattering from D2O–H2O Nanodroplets and Binary Nucleation Rates in A Supersonic Nozzle

Small angle neutron scattering (SANS) experiments were used to characterize binary nanodroplets composed of D2O and H2O. The droplets were formed by expanding dilute mixtures of condensible vapor in a N2 carrier gas through a supersonic nozzle, while maintaining the onset of condensation at a fixed position in the nozzle. It is remarkable, given the small coherent scattering length density of light water, that even the pure H2O aerosol gave a scattering signal above background. The scattering spectra were analyzed assuming a log-normal distribution of droplets. On average, the geometric radius of the nanodroplets rg was rg=13 (±1) nm, the polydispersity ln σr was ln σr=0.19 (±0.07), and the number density N was N=(2±0.2)⋅1011 cm−3. The aerosol volume fractions derived from the SANS measurements are consistent with those derived from the pressure trace experiments, suggesting that the composition of the droplets was close to that of the initial condensible mixture. A quantitative analysis of the scattering spectra as a function of the isotopic composition gave further evidence that the binary droplets exhibit ideal mixing behavior. Because both the stagnation temperature T0 and the location of onset were fixed, the temperature corresponding to the maximum nucleation rate was constant at TJ max=229 (±1) K. Thus, the experiments let us estimate the isothermal peak nucleation rates as a function of the isotopic composition. The nucleation rates were found to be essentially constant with Jmax equal to (3.6±0.5)⋅1016 cm−3 s−1 at a mean supersaturation of 44 (±3)

Positional, Reorientational and Bond Orientational Order in DNA Mesophases

We investigate the orientational order of transverse polarization vectors of long, stiff polymer molecules and their coupling to bond orientational and positional order in high density mesophases. Homogeneous ordering of transverse polarization vector promotes distortions in the hexatic phase, whereas inhomogeneous ordering precipitates crystalization of the 2D sections with different orientations of the transverse polarization vector on each molecule in the unit cell. We propose possible scenarios for going from the hexatic phase, through the distorted hexatic phase to the crystalline phase with an orthorhombic unit cell observed experimentally for the case of DNA.Comment: 4 pages, 2 figure