Gene expression differs in susceptible and resistant amphibians exposed to Batrachochytrium dendrobatidis.

Chytridiomycosis, the disease caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), has devastated global amphibian biodiversity. Nevertheless, some hosts avoid disease after Bd exposure even as others experience near-complete extirpation. It remains unclear whether the amphibian adaptive immune system plays a role in Bd defence. Here, we describe gene expression in two host species-one susceptible to chytridiomycosis and one resistant-following exposure to two Bd isolates that differ in virulence. Susceptible wood frogs (Rana sylvatica) had high infection loads and mortality when exposed to the more virulent Bd isolate but lower infection loads and no fatal disease when exposed to the less virulent isolate. Resistant American bullfrogs (R. catesbeiana) had high survival across treatments and rapidly cleared Bd infection or avoided infection entirely. We found widespread upregulation of adaptive immune genes and downregulation of important metabolic and cellular maintenance components in wood frogs after Bd exposure, whereas American bullfrogs showed little gene expression change and no evidence of an adaptive immune response. Wood frog responses suggest that adaptive immune defences may be ineffective against virulent Bd isolates that can cause rapid physiological dysfunction. By contrast, American bullfrogs exhibited robust resistance to Bd that is likely attributable, at least in part, to their continued upkeep of metabolic and skin integrity pathways as well as greater antimicrobial peptide expression compared to wood frogs, regardless of exposure. Greater understanding of these defences will ultimately help conservationists manage chytridiomycosis

Canonical Coordinates and Meson Spectra for Scalar Deformed N=4 SYM from the AdS/CFT Correspondence

Five supersymmetric scalar deformations of the AdS_5xS^5 geometry are investigated. By switching on condensates for the scalars in the N=4 multiplet with a form which preserves a subgroup of the original R-symmetry, disk and sphere configurations of D3-branes are formed in the dual supergravity background. The analytic, canonical metric for each geometry is formulated and the singularity structure is studied. Quarks are introduced into two of the corresponding field theories using D7-brane probes and the pseudoscalar meson spectrum is calculated. For one of the condensate configurations, a mass gap is found and shown analytically to be present in the massless limit. It is also found that there is a stepped spectrum with eigenstate degeneracy in the limit of small quark masses. In the case of a second, similar deformation, it is necessary to understand the full D3-D7 brane interaction to study the limit of small quark masses. It is seen that simple solutions to the equations of motion for the other three geometries are unlikely to exist.Comment: 16 pages, 7 figures, references added, typos correcte

Three Flavour QCD from the Holographic Principle

Building on recent research into five-dimensional holographic models of QCD, we extend this work by including the strange quark with an SU(3)_L\times SU(3)_R gauge symmetry in the five-dimensional theory. In addition we deform the naive $AdS$ metric with a single parameter, thereby breaking the conformal symmetry at low energies. The vector and axial vector sectors are studied in detail and both the masses and decay constants are calculated with the additional parameters. It is shown that with a single extra degree of freedom, exceptional agreement with experimental results can be obtained in the light quark sector while the kaon sector is found to give around 10% agreement with lattice results. We propose some simple extensions to this work to be taken up in future research.Comment: 9 pages, 1 figure, references adde

A note on conductivity and charge diffusion in holographic flavour systems

We analyze the charge diffusion and conductivity in a Dp/Dq holographic setup that is dual to a supersymmetric Yang-Mills theory in p+1 dimensions with N_f<< N_c flavour degrees of freedom at finite temperature and nonvanishing U(1) baryon number chemical potential. We provide a new derivation of the results that generalize the membrane paradigm to the present context. We perform a numerical analysis in the particular case of the D3/D7 flavor system. The results obtained support the validity of the Einstein relation at finite chemical potential.Comment: 15 pages, 3 figures, v2 with minor correction

Universal Holographic Chiral Dynamics in an External Magnetic Field

In this work we further extend the investigation of holographic gauge theories in external magnetic fields, continuing earlier work. We study the phenomenon of magnetic catalysis of mass generation in 1+3 and 1+2 dimensions, using D3/D7- and D3/D5-brane systems, respectively. We obtain the low energy effective actions of the corresponding pseudo Goldstone bosons and study their dispersion relations. The D3/D7 system exhibits the usual Gell-Mann--Oakes--Renner (GMOR) relation and a relativistic dispersion relation, while the D3/D5 system exhibits a quadratic non-relativistic dispersion relation and a modified linear GMOR relation. The low energy effective action of the D3/D5 system is related to that describing magnon excitations in a ferromagnet. We also study properties of general Dp/Dq systems in an external magnetic field and verify the universality of the magnetic catalysis of dynamical symmetry breaking.Comment: 41 pages, 11 figures, references adde

Chiral phase transitions and quantum critical points of the D3/D7(D5) system with mutually perpendicular E and B fields at finite temperature and density

We study chiral symmetry restoration with increasing temperature and density in gauge theories subject to mutually perpendicular electric and magnetic fields using holography. We determine the chiral symmetry breaking phase structure of the D3/D7 and D3/D5 systems in the temperature-density-electric field directions. A magnetic field may break the chiral symmetry and an additional electric field induces Ohm and Hall currents as well as restoring the chiral symmetry. At zero temperature the D3/D5 system displays a line of holographic BKT phase transitions in the density-electric field plane, while the D3/D7 system shows a mean-field phase transition. At intermediate temperatures, the transitions in the density-electric field plane are of first order at low density, transforming to second order at critical points as density rises. At high temperature the transition is only ever first order.Comment: 15 pages, 7 figures, v2: Added a referenc

NGN, QCD_2 and chiral phase transition from string theory

We construct a D2-D8-$\bar{D8}$ configuration in string theory, it can be described at low energy by two dimensional field theory. In the weak coupling region, the low energy theory is a nonlocal generalization of Gross-Neveu(GN) model which dynamically breaks the chiral flavor symmetry $U(N_f)_L \times U(N_f)_R$ at large $N_c$ and finite $N_f$. However, in the strong coupling region, we can use the SUGRA/Born-Infeld approximation to describe the low energy dynamics of the system. Also, we analyze the low energy dynamics about the configuration of wrapping the one direction of D2 brane on a circle with anti-periodic boundary condition of fermions. The fermions and scalars on D2 branes get mass and decouple from the low energy theory. The IR dynamics is described by the $QCD_2$ at weak coupling. In the opposite region, the dynamics has a holographic dual description. And we have discussed the phase transition of chiral symmetry breaking at finite temperature. Finally, after performing T-duality, this configuration is related to some other brane configurations.Comment: 30 pages, 3 figures, minor change

Linear square-mass trajectories of radially and orbitally excited hadrons in holographic QCD

We consider a new approach towards constructing approximate holographic duals of QCD from experimental hadron properties. This framework allows us to derive a gravity dual which reproduces the empirically found linear square-mass trajectories of universal slope for radially and orbitally excited hadrons. Conformal symmetry breaking in the bulk is exclusively due to infrared deformations of the anti-de Sitter metric and governed by one free mass scale proportional to Lambda_QCD. The resulting background geometry exhibits dual signatures of confinement and provides the first examples of holographically generated linear trajectories in the baryon sector. The predictions for the light hadron spectrum include new relations between trajectory slopes and ground state masses and are in good overall agreement with experiment.Comment: 33 pages, 5 figures, updated to the extended version published in JHEP, vector meson bulk potential and metric corrected, comments and references added, phenomenology and conclusions unchange

Holographic mesons in various dimensions

We calculate the spectrum of fluctuations of a probe Dk-brane in the background of N Dp-branes, for k=p,p+2,p+4 and p< 5. The result corresponds to the mesonic spectrum of a (p+1)-dimensional super-Yang-Mills (SYM) theory coupled to `dynamical quarks', i.e., fields in the fundamental representation -- the latter are confined to a defect for k=p and p+2. We find a universal behaviour where the spectrum is discrete and the mesons are deeply bound. The mass gap and spectrum are set by the scale M ~ m_q/g_{eff}(m_q), where m_q is the mass of the fundamental fields and g_{eff}(m_q) is the effective coupling evaluated at the quark mass, i.e. g_{eff}^2(m_q)=g_{ym}^2 N m_q^{p-3}. We consider the evolution of the meson spectra into the far infrared of three-dimensional SYM, where the gravity dual lifts to M-theory. We also argue that the mass scale appearing in the meson spectra is dictated by holography.Comment: 44 pages, 2 figures; v2: typos corrected, references adde

Open string modes at brane intersections

We study systematically the open string modes of a general class of BPS intersections of branes. We work in the approximation in which one of the branes is considered as a probe embedded in the near-horizon geometry generated by the other type of branes. We mostly concentrate on the D3-D5 and D3-D3 intersections, which are dual to defect theories with a massive hypermultiplet confined to the defect. In these cases we are able to obtain analytical expressions for the fluctuation modes of the probe and to compute the corresponding mass spectra of the dual operators in closed form. Other BPS intersections are also studied and their fluctuation modes and spectra are found numerically.Comment: 58 pages, 3 figures, LaTeX;v2: typos correcte