Tributes to Peter Homans

Peter Homans, Professor Emeritus at the University of Chicago Divinity School, died on Saturday, May 30, 2009, in Evanston, Illinois. The cause of death was complications from a recent stroke. Professor of Psychology and Religious Studies in the Divinity School, Professor Homans also held appointments in the Committee on Human Development and on the Committee on the History of Culture, as well as in the Social Sciences Collegiate Division. He joined the Divinity School faculty in 1965

The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting

<p>Abstract</p> <p>Background</p> <p>Mitochondrial genomes (mtDNA) of numerous sponges have been sequenced as part of an ongoing effort to resolve the class-level phylogeny of the Porifera, as well as to place the various lower metazoan groups on the animal-kingdom tree. Most recently, the partial mtDNA of two glass sponges, class Hexactinellida, were reported. While previous phylogenetic estimations based on these data remain uncertain due to insufficient taxon sampling and accelerated rates of evolution, the mtDNA molecules themselves reveal interesting traits that may be unique to hexactinellids. Here we determined the first complete mitochondrial genome of a hexactinellid sponge, <it>Aphrocallistes vastus</it>, and compared it to published poriferan mtDNAs to further describe characteristics specific to hexactinellid and other sponge mitochondrial genomes.</p> <p>Results</p> <p>The <it>A. vastus </it>mtDNA consisted of a 17,427 base pair circular molecule containing thirteen protein-coding genes, divergent large and small subunit ribosomal RNAs, and a reduced set of 18 tRNAs. The <it>A. vastus </it>mtDNA showed a typical hexactinellid nucleotide composition and shared a large synteny with the other sequenced glass sponge mtDNAs. It also contained an unidentified open reading frame and large intergenic space region. Two frameshifts, in the <it>cox3 </it>and <it>nad6 </it>genes, were not corrected by RNA editing, but rather possessed identical shift sites marked by the extremely rare tryptophan codon (UGG) followed by the common glycine codon (GGA) in the +1 frame.</p> <p>Conclusion</p> <p>Hexactinellid mtDNAs have shown similar trends in gene content, nucleotide composition, and codon usage, and have retained a large gene syntenty. Analysis of the mtDNA of <it>A. vastus </it>has provided evidence diagnostic for +1 programmed translational frameshifting, a phenomenon disparately reported throughout the animal kingdom, but present in the hexactinellid mtDNAs that have been sequenced to date.</p

Nanofluid-Based Direct Absorption Solar Collector

Solar energy is one of the best sources of renewable energy with minimal environmental impact. Direct absorption solar collectors have been proposed for a variety of applications such as water heating; however the efficiency of these collectors is limited by the absorption properties of the working fluid, which is very poor for typical fluids used in solar collectors. It has been shown that mixing nanoparticles in a liquid (nanofluid) has a dramatic effect on the liquid thermophysical properties such as thermal conductivity. Nanoparticles also offer the potential of improving the radiative properties of liquids, leading to an increase in the efficiency of direct absorption solar collectors. Here we report on the experimental results on solar collectors based on nanofluids made from a variety of nanoparticles (carbon nanotubes, graphite, and silver). We demonstrate efficiency improvements of up to 5% in solar thermal collectors by utilizing nanofluids as the absorption mechanism. In addition the experimental data were compared with a numerical model of a solar collector with direct absorption nanofluids. The experimental and numerical results demonstrate an initial rapid increase in efficiency with volume fraction, followed by a leveling off in efficiency as volume fraction continues to increase

Modal Reactors

Complex software systems often feature distinct modes of operation, each designed to handle a particular scenario that may require the system to respond in a certain way. Breaking down system behavior into mutually exclusive modes and discrete transitions between modes is a commonly used strategy to reduce implementation complexity and promote code readability. However, such capabilities often come in the form of self-contained domain specific languages or language-specific frameworks. The work in this paper aims to bring the advantages of modal models to mainstream programming languages, by following the polyglot coordination approach of Lingua Franca (LF), in which verbatim target code (e.g., C, C++, Python, Typescript, or Rust) is encapsulated in composable reactive components called reactors. Reactors can form a dataflow network, are triggered by timed as well as sporadic events, execute concurrently, and can be distributed across nodes on a network. With modal models in LF, we introduce a lean extension to the concept of reactors that enables the coordination of reactive tasks based on modes of operation. The implementation of modal reactors outlined in this paper generalizes to any LF-supported language with only modest modifications to the generic runtime system

From Marx to Gramsci to us: Laboratory to prison, and back

Marx and Gramsci remain two of the most constant presences and inspirations for those on the left. Yet there is a persistent sense that we have still to get them right. Perhaps this indicates that sources like this are now fully classics, to be returned, and returned to. In the case of Marx and Gramsci, a series of major works published in the Brill Historical Materialism series breaks new ground as well as returning to older controversies, both resolved and unresolved. Apart from remaining arguments concerning the status of materials unpublished in their own lifetimes, the major tension that emerges here is that between the task of immanent, contextual philology and the challenge of reading ‘Marx for today’ or ‘Gramsci for today’. The tension between text and context, and the question of what travels, conceptually persists

Configuring the PrEP user: Framing Pre-exposure Prophylaxis in UK newsprint 2012 – 2016

Pre-exposure prophylaxis (PrEP) has been hailed as a revolutionary intervention for HIV prevention. PrEP’s controversial status in the UK has generated significant media coverage. It is important to understand what role the media plays in framing PrEP policy issues. We undertook a qualitative analysis of UK newsprint articles between 2012 and 2016 to examine how PrEP was framed as a public health intervention up until a controversial policy decision not to provide PrEP in England. We identified how scientific evidence was deployed to shape two narratives: ir/responsible citizens focused on imagined PrEP users and their capacity to use PrEP effectively; and the public health imperative, which described the need for PrEP. Our analysis demonstrates the particular ways in which scientific evidence contributed to the certainty of PrEP as an effective intervention within UK newsprint. Scientific evidence also played a key role in framing PrEP as an intervention specifically for cis-gendered gay and bisexual men, playing into wider debates about who is a deserving patient and the appropriate use of public resources. Practitioners in the UK and elsewhere should be aware of these constructions of the PrEP user to ensure equitable access to PrEP beyond gay and bisexual men

Behavior Trees with Dataflow: Coordinating Reactive Tasks in Lingua Franca

Behavior Trees (BTs) provide a lean set of control flow elements that are easily composable in a modular tree structure. They are well established for modeling the high-level behavior of non-player characters in computer games and recently gained popularity in other areas such as industrial automation. While BTs nicely express control, data handling aspects so far must be provided separately, e. g. in the form of blackboards. This may hamper reusability and can be a source of nondeterminism. We here present a dataflow extension to BTs that explicitly models data relations and communication. We provide a combined textual/graphical approach in line with modern, productivity-enhancing pragmatics-aware modeling techniques. We realized and validated that approach in the recently introduced polyglot coordination language Lingua Franca (LF)

Rethinking the Poverty-disease Nexus: the Case of HIV/AIDS in South Africa

While it is well-established that poverty and disease are intimately connected, the nature of this connection and the role of poverty in disease causation remains contested in scientific and social studies of disease. Using the case of HIV/AIDS in South Africa and drawing on a theoretically grounded analysis, this paper reconceptualises disease and poverty as ontologically entangled. In the context of the South African HIV epidemic, this rethinking of the poverty-disease dynamic enables an account of how social forces such as poverty become embodied in the very substance of disease to produce ontologies of HIV/AIDS unique to South Africa

Time in SCCharts

Synchronous languages, such as the recently proposed SCCharts language, have been designed for the rigorous specification of real-time systems. Their sound semantics, which builds on an abstraction from physical execution time, make these languages appealing, in particular for safety-critical systems. However, they traditionally lack built-in support for physical time. This makes it rather cumbersome to express things like time-outs or periodic executions within the language. We here propose several mechanisms to reconcile the synchronous paradigm with physical time. Specifically, we propose extensions to the SCCharts language to express clocks and execution periods within the model. We draw on several sources, in particular timed automata, the Clock Constraint Specification Language, and the recently proposed concept of dynamic ticks. We illustrate how these extensions can be mapped to the SCChart language core, with minimal requirements on the run-time system, and we argue that the same concepts could be applied to other synchronous languages such as Esterel, Lustre or SCADE

Reduced haemodynamic response in the ageing visual cortex measured by absolute fNIRS

The effect of healthy ageing on visual cortical activation is still to be fully explored. This study aimed to elucidate whether the haemodynamic response (HDR) of the visual cortex altered as a result of ageing. Visually normal (healthy) participants were presented with a simple visual stimulus (reversing checkerboard). Full optometric screening was implemented to identify two age groups: younger adults (n = 12, mean age 21) and older adults (n = 13, mean age 71). Frequency-domain Multi-distance (FD-MD) functional Near-Infrared Spectroscopy (fNIRS) was used to measure absolute changes in oxygenated [HbO] and deoxygenated [HbR] haemoglobin concentrations in the occipital cortices. Utilising a slow event-related design, subjects viewed a full field reversing checkerboard with contrast and check size manipulations (15 and 30 minutes of arc, 50% and 100% contrast). Both groups showed the characteristic response of increased [HbO] and decreased [HbR] during stimulus presentation. However, older adults produced a more varied HDR and often had comparable levels of [HbO] and [HbR] during both stimulus presentation and baseline resting state. Younger adults had significantly greater concentrations of both [HbO] and [HbR] in every investigation regardless of the type of stimulus displayed (p<0.05). The average variance associated with this age-related effect for [HbO] was 88% and [HbR] 91%. Passive viewing of a visual stimulus, without any cognitive input, showed a marked age-related decline in the cortical HDR. Moreover, regardless of stimulus parameters such as check size, the HDR was characterised by age. In concurrence with present neuroimaging literature, we conclude that the visual HDR decreases as healthy ageing proceeds