344 research outputs found

    Tracking Driver Eye Movements at Permissive Left-Turns

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    The objective of this analysis was to identify sources of informationused by left-turning drivers. To complete the experiment, a virtual network ofsignalized intersections was created for use in a driving simulator equipped withhead and eye tracking equipment. Fourteen drivers were recruited to participate inthe experiment, which included two independent variables (permissive signalindication and presence of opposing traffic). The primary dependent variable wasthe associated eye movements at permissive left-turns, including the magnitude oftime focused on each potential cue and the pattern in which cues were detected.To complete the analysis, eye movements were tracked and the screen wasdivided into “areas of interest,” which coincided with potential cues used in thecompletion of a permissive left turn. For each permissive scenario, drivers usedmore total cues when no opposing traffic was present. Specifically, in theabsence of opposing traffic, drivers fixated on a wider array of availableinformation. When opposing traffic was present, drivers spent a majority of timefocused on opposing traffic and would use this as a base point from which theywould glance at other data sources. Overall, drivers looked at least once at theprotected/permissive left-turn (PPLT) signal display and the opposing trafficstream. Drivers tended to scan the intersection from right to left, after initiallylocating the PPLT signal display and opposing traffic and/or stop bar area. Theresults of the eye movement analysis are consistent with data obtained in afollow-up static evaluation

    Static and Dynamic Evaluation of the Driver Speed Perception and Selection Process

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    Speed impacts the extent to which mobility and safety are experienced across the surface transportation network. By expanding current understanding of speed perception and selection processes our ability to understand and comprehensively address speed-related issues will improve. Driving simulator technology has advanced the field of transportation research. However, it has been limited in its application to speed-related issues. Furthermore, static computer-based evaluations have been used as a means of establishing a preliminary understanding for driver interpretation of stimuli encountered in the roadway, but have been limited in their application to speed. These technologies allow for large sample populations to be evaluated quickly and safely. Phase I of this initiative examined driver ability to perceive travel speeds in a similar real world, simulated world, and static environment. The experimental course traversed roadway where land-use and posted speed limits varied. Drivers’ actual and perceived speeds were recorded at 20 identical “checkpoint” locations in each environment, and the results were analyzed across drivers and environments. Phase II examined three roadway attributes that impact the speed-selection process. A focus group was employed to build improved scenarios of interest for a full-scale static evaluation. In the static environment, 75 drivers were asked how fast they would travel while individual characteristics of the scenario displayed were modified. This multifaceted research initiative expands the potential application of advanced technology in speed-related research, and improves the understanding of factors that influence speed perception and selection processes

    Activation of Akt by the Bacterial Inositol Phosphatase, SopB, is Wortmannin Insensitive

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    Salmonella enterica uses effector proteins translocated by a Type III Secretion System to invade epithelial cells. One of the invasion-associated effectors, SopB, is an inositol phosphatase that mediates sustained activation of the pro-survival kinase Akt in infected cells. Canonical activation of Akt involves membrane translocation and phosphorylation and is dependent on phosphatidyl inositide 3 kinase (PI3K). Here we have investigated these two distinct processes in Salmonella infected HeLa cells. Firstly, we found that SopB-dependent membrane translocation and phosphorylation of Akt are insensitive to the PI3K inhibitor wortmannin. Similarly, depletion of the PI3K regulatory subunits p85α and p85ß by RNAi had no inhibitory effect on SopB-dependent Akt phosphorylation. Nevertheless, SopB-dependent phosphorylation does depend on the Akt kinases, PDK1 and rictor-mTOR. Membrane translocation assays revealed a dependence on SopB for Akt recruitment to Salmonella ruffles and suggest that this is mediated by phosphoinositide (3,4) P2 rather than phosphoinositide (3,4,5) P3. Altogether these data demonstrate that Salmonella activates Akt via a wortmannin insensitive mechanism that is likely a class I PI3K-independent process that incorporates some essential elements of the canonical pathway

    Automated Analysis of Cryptococcal Macrophage Parasitism Using GFP-Tagged Cryptococci

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    The human fungal pathogens Cryptococcus neoformans and C. gattii cause life-threatening infections of the central nervous system. One of the major characteristics of cryptococcal disease is the ability of the pathogen to parasitise upon phagocytic immune effector cells, a phenomenon that correlates strongly with virulence in rodent models of infection. Despite the importance of phagocyte/Cryptococcus interactions to disease progression, current methods for assaying virulence in the acrophage system are both time consuming and low throughput. Here, we introduce the first stable and fully characterised GFP–expressing derivatives of two widely used cryptococcal strains: C. neoformans serotype A type strain H99 and C. gattii serotype B type strain R265. Both strains show unaltered responses to environmental and host stress conditions and no deficiency in virulence in the macrophage model system. In addition, we report the development of a method to effectively and rapidly investigate macrophage parasitism by flow cytometry, a technique that preserves the accuracy of current approaches but offers a four-fold improvement in speed

    Structural and Biochemical Characterization of SrcA, a Multi-Cargo Type III Secretion Chaperone in Salmonella Required for Pathogenic Association with a Host

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    Many Gram-negative bacteria colonize and exploit host niches using a protein apparatus called a type III secretion system (T3SS) that translocates bacterial effector proteins into host cells where their functions are essential for pathogenesis. A suite of T3SS-associated chaperone proteins bind cargo in the bacterial cytosol, establishing protein interaction networks needed for effector translocation into host cells. In Salmonella enterica serovar Typhimurium, a T3SS encoded in a large genomic island (SPI-2) is required for intracellular infection, but the chaperone complement required for effector translocation by this system is not known. Using a reverse genetics approach, we identified a multi-cargo secretion chaperone that is functionally integrated with the SPI-2-encoded T3SS and required for systemic infection in mice. Crystallographic analysis of SrcA at a resolution of 2.5 Å revealed a dimer similar to the CesT chaperone from enteropathogenic E. coli but lacking a 17-amino acid extension at the carboxyl terminus. Further biochemical and quantitative proteomics data revealed three protein interactions with SrcA, including two effector cargos (SseL and PipB2) and the type III-associated ATPase, SsaN, that increases the efficiency of effector translocation. Using competitive infections in mice we show that SrcA increases bacterial fitness during host infection, highlighting the in vivo importance of effector chaperones for the SPI-2 T3SS

    Niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of <i>Salmonella enterica</i>

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    AbstractSalmonella enterica serovar Typhimurium (S. Typhimurium) is a zoonotic pathogen that causes diarrheal disease in humans and animals. During salmonellosis, S. Typhimurium colonizes epithelial cells lining the gastrointestinal tract. S. Typhimurium has an unusual lifestyle in epithelial cells that begins within an endocytic-derived Salmonella-containing vacuole (SCV), followed by escape into the cytosol, epithelial cell lysis and bacterial release. The cytosol is a more permissive environment than the SCV and supports rapid bacterial growth. The physicochemical conditions encountered by S. Typhimurium within the cytosol, and the bacterial genes required for cytosolic colonization, remain unknown. Here we have exploited the parallel colonization strategies of S. Typhimurium in epithelial cells to decipher the two niche-specific bacterial virulence programs. By combining a population-based RNA-seq approach with single-cell microscopic analysis, we identified bacterial genes/sRNAs with cytosol-specific or vacuole-specific expression signatures. Using these genes/sRNAs as environmental biosensors, we defined that Salmonella is exposed to iron and manganese deprivation and oxidative stress in the cytosol and zinc and magnesium deprivation in the SCV. Furthermore, iron availability was critical for optimal S. Typhimurium replication in the cytosol, as well as entC, fepB, soxS and sitA-mntH. Virulence genes that are typically associated with extracellular bacteria, namely Salmonella pathogenicity island 1 (SPI1) and SPI4, had a cytosolic-specific expression profile. Our study reveals that the cytosolic and vacuolar S. Typhimurium virulence gene programs are unique to, and tailored for, residence within distinct intracellular compartments. Therefore, this archetypical vacuole-adapted pathogen requires extensive transcriptional reprogramming to successfully colonize the mammalian cytosol.Author SummaryIntracellular pathogens reside either within a membrane-bound vacuole or are free-living in the cytosol and their virulence programs are tailored towards survival within a particular intracellular compartment. Some bacterial pathogens (such as Salmonella enterica) can successfully colonize both intracellular niches, but how they do so is unclear. Here we have exploited the parallel intracellular lifestyles of S. enterica in epithelial cells to identify the niche-specific bacterial expression profiles and environmental cues encountered by S. enterica. We have also discovered bacterial genes that are required for colonization of the cytosol, but not the vacuole. Our results advance our understanding of pathogen-adaptation to alternative replication niches and highlight an emerging concept in the field of bacteria-host cell interactions.</jats:sec
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