Towards structured sharing of raw and derived neuroimaging data across existing resources

Data sharing efforts increasingly contribute to the acceleration of scientific discovery. Neuroimaging data is accumulating in distributed domain-specific databases and there is currently no integrated access mechanism nor an accepted format for the critically important meta-data that is necessary for making use of the combined, available neuroimaging data. In this manuscript, we present work from the Derived Data Working Group, an open-access group sponsored by the Biomedical Informatics Research Network (BIRN) and the International Neuroimaging Coordinating Facility (INCF) focused on practical tools for distributed access to neuroimaging data. The working group develops models and tools facilitating the structured interchange of neuroimaging meta-data and is making progress towards a unified set of tools for such data and meta-data exchange. We report on the key components required for integrated access to raw and derived neuroimaging data as well as associated meta-data and provenance across neuroimaging resources. The components include (1) a structured terminology that provides semantic context to data, (2) a formal data model for neuroimaging with robust tracking of data provenance, (3) a web service-based application programming interface (API) that provides a consistent mechanism to access and query the data model, and (4) a provenance library that can be used for the extraction of provenance data by image analysts and imaging software developers. We believe that the framework and set of tools outlined in this manuscript have great potential for solving many of the issues the neuroimaging community faces when sharing raw and derived neuroimaging data across the various existing database systems for the purpose of accelerating scientific discovery

The Indonesian digital library network is born to struggle with the digital divide

IndonesiaDLN –The Indonesian Digital Library Network– is a distributed collection of digital library networks, digital library servers, full local contents, metadata, and people for the development of the Indonesian knowledge-based society. Beside the general issues of digital library such as publishing, quality control, authentication, networking, and information retrieval, we also face other issue –namely digital divide– in designing and implementing the Network. This paper describes basic design of the Network that able to handle the typical problems in developing digital library network in Indonesia as a developing country, such as internet accessibility, bandwidth capacity, and network delays. We also will describe our experiences in implementing the Network that currently has 14 successfully connected partners and more than 15 partners are in progress of developing their digital library servers

Publishing Primary Data on the World Wide Web: Opencontext.org and an Open Future for the Past

More scholars are exploring forms of digital dissemination, including open access (OA) systems where content is made available free of charge. These include peer -reviewed e -journals as well as traditional journals that have an online presence. Besides SHA's Technical Briefs in Historical Archaeology, the American Journal of Archaeology now offers open access to downloadable articles from their printed issues. Similarly, Evolutionary Anthropology offers many full -text articles free for download. More archaeologists are also taking advantage of easy Web publication to post copies of their publications on personal websites. Roughly 15% of all scholars participate in such "self -archiving." To encourage this practice, Science Commons (2006) and the Scholarly Publishing and Academic Resources Coalition (SPARC) recently launched the Scholar Copyright Project, an initiative that will develop standard "Author Addenda" -- a suite of short amendments to attach to copyright agreements from publishers (http://sciencecommons. org/projects/publishing/index.html). These addenda make it easier for paper authors to retain and clarify their rights to self -archive their papers electronically. Several studies now clearly document that self -archiving and OA publication enhances uptake and citation rates (Hajjem et al. 2005). Researchers enhance their reputations and stature by opening up their scholarship.Mounting pressure for greater public access also comes from many research stakeholders. Granting foundations interested in maximizing the return on their investment in basic research are often encouraging and sometimes even requiring some form of OA electronic dissemination. Interest in maximizing public access to publicly financed research is catching on in Congress. A new bipartisan bill, the Federal Research Public Access Act, would require OA for drafts of papers that pass peer review and result from federally funded research (U.S. Congress 2006). The bill would create government -funded digital repositories that would host and maintain these draft papers. University libraries are some of the most vocal advocates for OA research. Current publishing frameworks have seen dramatically escalated costs, sometimes four times higher than the general rate of inflation (Create Change 2003). Increasing costs have forced many libraries to cancel subscriptions and thereby hurt access and scholarship (Association for College and Research Libraries 2003; Suber 2004).This article originally published in Technical Briefs In Historical Archaeology, 2007, 2: -11

Planning the digital library development between tradition and innovation

Libraries, archives and museums are centuries old institutions which have been committed to physical, concepual and long term access to the artefacts of human knowledge, as books, objects, documents. These cultural institutions are now confronting with enormous challenges brought about by the shift of these artifacts from analog to digital format. It is not only a problem of dealing with technologies, or simply with a different support of information. Digital objects and resources, physical represented by digit, have different properties than information stored in stone, papyrus, paper. Since the vision of digital library, by Vannevar Bush, the functionalities requested to a digital library are more than a simple library. The new role of digital library is providing an information space which facilitates communication, resources sharing and knowledge creatio

webXice: an Infrastructure for Information Commerce on the WWW

Systems for information commerce on the WWW have to support flexible business models if they should be able to cover a wide range of requirements imposed by the different types of information businesses. This leads to non-trivial functional and security requirements both on the provider and consumer side, for which we introduce an architecture and a system implementation, webXice. We focus on the question, how participants with minimal technological requisites, i.e. solely standard Web browsers available, can be technologically enabled to articipate in the information commerce at a system level, while not sacrificing the functionality and security required by an autonomous participant in an information commerce scenario. In particular, we propose an implementation strategy to efficiently support persistent message logging for light-weight clients, that enables clients to collect and manage non-reputiable messages as proofs. We believe that the capability to support minimal system platforms is a necessary precondition for the wide-spread use of any information commerce infrastructure