Time-Space Efficient Regression Testing for Configurable Systems

Configurable systems are those that can be adapted from a set of options. They are prevalent and testing them is important and challenging. Existing approaches for testing configurable systems are either unsound (i.e., they can miss fault-revealing configurations) or do not scale. This paper proposes EvoSPLat, a regression testing technique for configurable systems. EvoSPLat builds on our previously-developed technique, SPLat, which explores all dynamically reachable configurations from a test. EvoSPLat is tuned for two scenarios of use in regression testing: Regression Configuration Selection (RCS) and Regression Test Selection (RTS). EvoSPLat for RCS prunes configurations (not tests) that are not impacted by changes whereas EvoSPLat for RTS prunes tests (not configurations) which are not impacted by changes. Handling both scenarios in the context of evolution is important. Experimental results show that EvoSPLat is promising. We observed a substantial reduction in time (22%) and in the number of configurations (45%) for configurable Java programs. In a case study on a large real-world configurable system (GCC), EvoSPLat reduced 35% of the running time. Comparing EvoSPLat with sampling techniques, 2-wise was the most efficient technique, but it missed two bugs whereas EvoSPLat detected all bugs four times faster than 6-wise, on average.Comment: 14 page

Causality, Information and Biological Computation: An algorithmic software approach to life, disease and the immune system

Biology has taken strong steps towards becoming a computer science aiming at reprogramming nature after the realisation that nature herself has reprogrammed organisms by harnessing the power of natural selection and the digital prescriptive nature of replicating DNA. Here we further unpack ideas related to computability, algorithmic information theory and software engineering, in the context of the extent to which biology can be (re)programmed, and with how we may go about doing so in a more systematic way with all the tools and concepts offered by theoretical computer science in a translation exercise from computing to molecular biology and back. These concepts provide a means to a hierarchical organization thereby blurring previously clear-cut lines between concepts like matter and life, or between tumour types that are otherwise taken as different and may not have however a different cause. This does not diminish the properties of life or make its components and functions less interesting. On the contrary, this approach makes for a more encompassing and integrated view of nature, one that subsumes observer and observed within the same system, and can generate new perspectives and tools with which to view complex diseases like cancer, approaching them afresh from a software-engineering viewpoint that casts evolution in the role of programmer, cells as computing machines, DNA and genes as instructions and computer programs, viruses as hacking devices, the immune system as a software debugging tool, and diseases as an information-theoretic battlefield where all these forces deploy. We show how information theory and algorithmic programming may explain fundamental mechanisms of life and death.Comment: 30 pages, 8 figures. Invited chapter contribution to Information and Causality: From Matter to Life. Sara I. Walker, Paul C.W. Davies and George Ellis (eds.), Cambridge University Pres

Software Verification and Graph Similarity for Automated Evaluation of Students' Assignments

In this paper we promote introducing software verification and control flow graph similarity measurement in automated evaluation of students' programs. We present a new grading framework that merges results obtained by combination of these two approaches with results obtained by automated testing, leading to improved quality and precision of automated grading. These two approaches are also useful in providing a comprehensible feedback that can help students to improve the quality of their programs We also present our corresponding tools that are publicly available and open source. The tools are based on LLVM low-level intermediate code representation, so they could be applied to a number of programming languages. Experimental evaluation of the proposed grading framework is performed on a corpus of university students' programs written in programming language C. Results of the experiments show that automatically generated grades are highly correlated with manually determined grades suggesting that the presented tools can find real-world applications in studying and grading

Virtual Organizational Learnign in Open Source Software Development Projects

We studied the existence of virtual organizational learning in open source software (OSS) development projects. Specifically, our research focused on learning effects of OSS projects and factors that affect the learning process. The number and percentage of resolved bugs and bug resolution time of 118 SourceForge.net OSS projects were used to measure the learning effects> Projects were characterized by project type, number and experience of developers, number of bugs, and bug resolution time. Our results provide evidence of virtual organizational learning in OSS development projects.Virtual organizational leraning: Organizational learning curve: Virtual organization: Open source software development: Project performance

Full Open Population Capture-Recapture Models with Individual Covariates

Traditional analyses of capture-recapture data are based on likelihood functions that explicitly integrate out all missing data. We use a complete data likelihood (CDL) to show how a wide range of capture-recapture models can be easily fitted using readily available software JAGS/BUGS even when there are individual-specific time-varying covariates. The models we describe extend those that condition on first capture to include abundance parameters, or parameters related to abundance, such as population size, birth rates or lifetime. The use of a CDL means that any missing data, including uncertain individual covariates, can be included in models without the need for customized likelihood functions. This approach also facilitates modeling processes of demographic interest rather than the complexities caused by non-ignorable missing data. We illustrate using two examples, (i) open population modeling in the presence of a censored time-varying individual covariate in a full robust-design, and (ii) full open population multi-state modeling in the presence of a partially observed categorical variable