Energy Concerns with HPC Systems and Applications

For various reasons including those related to climate changes, {\em energy} has become a critical concern in all relevant activities and technical designs. For the specific case of computer activities, the problem is exacerbated with the emergence and pervasiveness of the so called {\em intelligent devices}. From the application side, we point out the special topic of {\em Artificial Intelligence}, who clearly needs an efficient computing support in order to succeed in its purpose of being a {\em ubiquitous assistant}. There are mainly two contexts where {\em energy} is one of the top priority concerns: {\em embedded computing} and {\em supercomputing}. For the former, power consumption is critical because the amount of energy that is available for the devices is limited. For the latter, the heat dissipated is a serious source of failure and the financial cost related to energy is likely to be a significant part of the maintenance budget. On a single computer, the problem is commonly considered through the electrical power consumption. This paper, written in the form of a survey, we depict the landscape of energy concerns in computer activities, both from the hardware and the software standpoints.Comment: 20 page

Green HPC: Optimizing Software Stack Energy Efficiency of Large Data Systems

High-performance computing (HPC) is indispensable in modern scientific research and industry applications, but its energy consumption is a growing concern. This thesis presents two novel approaches to optimize energy consumption in large data systems. The first chapter of the thesis will discuss the use of Dynamic Voltage and Frequency Scaling (DVFS) to optimize the energy efficiency of two popular lossy compression algorithms: SZ and ZFP. By adjusting the voltage and frequency levels of computing resources, DVFS can reduce energy consumption while maintaining the desired level of performance and accuracy. The second chapter of the thesis will focus on a detailed comparison and analysis of asynchronous and synchronous checkpointing energy consumption using the VELOC and GenericIO libraries. The study investigates the trade-offs between these two checkpointing techniques, offering insights into their energy consumption patterns and performance impacts on large-scale HPC systems. Based on the analysis, we provide recommendations for choosing the most energy-efficient checkpointing method for specific application scenarios. Together, these two approaches contribute to the development of Green HPC, paving the way for more sustainable and energy-efficient large data systems. This thesis will provide valuable insights for researchers and industry practitioners aiming to optimize energy consumption while maintaining high-performance computing capabilities. i

Multicore architecture optimizations for HPC applications

From single-core CPUs to detachable compute accelerators, supercomputers made a tremendous progress by using available transistors on chip and specializing hardware for a given type of computation. Today, compute nodes used in HPC employ multi-core CPUs tailored for serial execution and multiple accelerators (many-core devices or GPUs) for throughput computing. However, designing next-generation HPC system requires not only the performance improvement but also better energy efficiency. Current trend of reaching exascale level of computation asks for at least an order of magnitude increase in both of these metrics. This thesis explores HPC-specific optimizations in order to make better utilization of the available transistors and to improve performance by transparently executing parallel code across multiple GPU accelerators. First, we analyze several HPC benchmark suites, compare them against typical desktop applications, and identify the differences which advocate for proper core tailoring. Moreover, within the HPC applications, we evaluate serial and parallel code sections separately, resulting in an Asymmetric Chip Multiprocessor (ACMP) design with one core optimized for single-thread performance and many lean cores for parallel execution. Our results presented here suggests downsizing of core front-end structures providing an HPC-tailored lean core which saves 16% of the core area and 7% of power, without performance loss. Further improving an ACMP design, we identify that multiple lean cores run the same code during parallel regions. This motivated us to evaluate the idea where lean cores share the I-cache with the intent of benefiting from mutual prefetching, without increasing the average access latency. Our exploration of the multiple parameters finds the sweet spot on a wide interconnect to access the shared I-cache and the inclusion of a few line buffers to provide the required bandwidth and latency to sustain performance. The projections presented in this thesis show additional 11% area savings with a 5% energy reduction at no performance cost. These area and power savings might be attractive for many-core accelerators either for increasing the performance per area and power unit, or adding additional cores and thus improving the performance for the same hardware budget. Finally, in this thesis we study the effects of future NUMA accelerators comprised of multiple GPU devices. Reaching the limits of a single-GPU die size, next-generation GPU compute accelerators will likely embrace multi-socket designs increasing the core count and memory bandwidth. However, maintaining the UMA behavior of a single-GPU in multi-GPU systems without code rewriting stands as a challenge. We investigate multi-socket NUMA GPU designs and show that significant changes are needed to both the GPU interconnect and cache architectures to achieve performance scalability. We show that application phase effects can be exploited allowing GPU sockets to dynamically optimize their individual interconnect and cache policies, minimizing the impact of NUMA effects. Our NUMA-aware GPU outperforms a single GPU by 1.5×, 2.3×, and 3.2× while achieving 89%, 84%, and 76% of theoretical application scalability in 2, 4, and 8 sockets designs respectively. Implementable today, NUMA-aware multi-socket GPUs may be a promising candidate for performance scaling of future compute nodes used in HPC.Empezando por CPUs de un solo procesador, y pasando por aceleradores discretos, los supercomputadores han avanzado enormemente utilizando todos los transistores disponibles en el chip, y especializando los diseños para cada tipo de cálculo. Actualmente, los nodos de cálculo de un sistema de Computación de Altas Prestaciones (CAP) utilizan CPUs de múltiples procesadores, optimizados para el cálculo serial de instrucciones, y múltiples aceleradores (aceleradores gráficos, o many-core), optimizados para el cálculo paralelo. El diseño de un sistema CAP de nueva generación requiere no solo mejorar el rendimiento de cálculo, sino también mejorar la eficiencia energética. La siguiente generación de sistemas requiere mejorar un orden de magnitud en ambas métricas simultáneamente. Esta tesis doctoral explora optimizaciones específicas para sistemas CAP para hacer un mejor uso de los transistores, y para mejorar las prestaciones de forma transparente ejecutando las aplicaciones en múltiples aceleradores en paralelo. Primero, analizamos varios conjuntos de aplicaciones CAP, y las comparamos con aplicaciones para servidores y escritorio, identificando las principales diferencias que nos indican cómo ajustar la arquitectura para CAP. En las aplicaciones CAP, también analizamos la parte secuencial del código y la parte paralela de forma separada, . El resultado de este análisis nos lleva a proponer una arquitectura multiprocesador asimétrica (ACMP) , con un procesador optimizado para el código secuencial, y múltiples procesadores, más pequeños, optimizados para el procesamiento paralelo. Nuestros resultados muestran que reducir el tamaño de las estructuras del front-end (fetch, y predicción de saltos) en los procesadores paralelos nos proporciona un 16% extra de área en el chip, y una reducción de consumo del 7%. Como mejora a nuestra arquitectura ACMP, proponemos explotar el hecho de que todos los procesadores paralelos ejecutan el mismo código al mismo tiempo. Evaluamos una propuesta en que los procesadores paralelos comparten la caché de instrucciones, con la intención de que uno de ellos precargue las instrucciones para los demás procesadores (prefetching), sin aumentar la latencia media de acceso. Nuestra exploración de los distintos parámetros determina que el punto óptimo requiere una interconexión de alto ancho de banda para acceder a la caché compartida, y el uso de unos pocos line buffers para mantener el ancho de banda y la latencia necesarios. Nuestras proyecciones muestran un ahorro adicional del 11% en área y el 5% en energía, sin impacto en el rendimiento. Estos ahorros de área y energía permiten a un multiprocesador incrementar la eficiencia energética, o aumentar el rendimiento añadiendo procesador adicionales. Por último, estudiamos el efecto de usar múltiples aceleradores (GPU) en una arquitectura con tiempo de acceso a memoria no uniforme (NUMA). Una vez alcanzado el límite de número de transistores y tamaño máximo por chip, la siguiente generación de aceleradores deberá utilizar múltiples chips para aumentar el número de procesadores y el ancho de banda de acceso a memoria. Sin embargo, es muy difícil mantener la ilusión de un tiempo de acceso a memoria uniforme en un sistema multi-GPU sin reescribir el código de la aplicación. Nuestra investigación sobre sistemas multi-GPU muestra retos significativos en el diseño de la interconexión entre las GPU y la jerarquía de memorias cache. Nuestros resultados muestran que se puede explotar el comportamiento en fases de las aplicaciones para optimizar la configuración de la interconexión y las cachés de forma dinámica, minimizando el impacto de la arquitectura NUMA. Nuestro diseño mejora el rendimiento de un sistema con una única GPU en 1.5x, 2.3x y 3.2x (el 89%, 84%, y 76% del máximo teórico) usando 2, 4, y 8 GPUs en paralelo. Siendo su implementación posible hoy en dia, los nodos de cálculo con múltiples aceleradores son una alternativa atractiva para futuros sistemas CAP.Postprint (published version

Multicore architecture optimizations for HPC applications

From single-core CPUs to detachable compute accelerators, supercomputers made a tremendous progress by using available transistors on chip and specializing hardware for a given type of computation. Today, compute nodes used in HPC employ multi-core CPUs tailored for serial execution and multiple accelerators (many-core devices or GPUs) for throughput computing. However, designing next-generation HPC system requires not only the performance improvement but also better energy efficiency. Current trend of reaching exascale level of computation asks for at least an order of magnitude increase in both of these metrics. This thesis explores HPC-specific optimizations in order to make better utilization of the available transistors and to improve performance by transparently executing parallel code across multiple GPU accelerators. First, we analyze several HPC benchmark suites, compare them against typical desktop applications, and identify the differences which advocate for proper core tailoring. Moreover, within the HPC applications, we evaluate serial and parallel code sections separately, resulting in an Asymmetric Chip Multiprocessor (ACMP) design with one core optimized for single-thread performance and many lean cores for parallel execution. Our results presented here suggests downsizing of core front-end structures providing an HPC-tailored lean core which saves 16% of the core area and 7% of power, without performance loss. Further improving an ACMP design, we identify that multiple lean cores run the same code during parallel regions. This motivated us to evaluate the idea where lean cores share the I-cache with the intent of benefiting from mutual prefetching, without increasing the average access latency. Our exploration of the multiple parameters finds the sweet spot on a wide interconnect to access the shared I-cache and the inclusion of a few line buffers to provide the required bandwidth and latency to sustain performance. The projections presented in this thesis show additional 11% area savings with a 5% energy reduction at no performance cost. These area and power savings might be attractive for many-core accelerators either for increasing the performance per area and power unit, or adding additional cores and thus improving the performance for the same hardware budget. Finally, in this thesis we study the effects of future NUMA accelerators comprised of multiple GPU devices. Reaching the limits of a single-GPU die size, next-generation GPU compute accelerators will likely embrace multi-socket designs increasing the core count and memory bandwidth. However, maintaining the UMA behavior of a single-GPU in multi-GPU systems without code rewriting stands as a challenge. We investigate multi-socket NUMA GPU designs and show that significant changes are needed to both the GPU interconnect and cache architectures to achieve performance scalability. We show that application phase effects can be exploited allowing GPU sockets to dynamically optimize their individual interconnect and cache policies, minimizing the impact of NUMA effects. Our NUMA-aware GPU outperforms a single GPU by 1.5×, 2.3×, and 3.2× while achieving 89%, 84%, and 76% of theoretical application scalability in 2, 4, and 8 sockets designs respectively. Implementable today, NUMA-aware multi-socket GPUs may be a promising candidate for performance scaling of future compute nodes used in HPC.Empezando por CPUs de un solo procesador, y pasando por aceleradores discretos, los supercomputadores han avanzado enormemente utilizando todos los transistores disponibles en el chip, y especializando los diseños para cada tipo de cálculo. Actualmente, los nodos de cálculo de un sistema de Computación de Altas Prestaciones (CAP) utilizan CPUs de múltiples procesadores, optimizados para el cálculo serial de instrucciones, y múltiples aceleradores (aceleradores gráficos, o many-core), optimizados para el cálculo paralelo. El diseño de un sistema CAP de nueva generación requiere no solo mejorar el rendimiento de cálculo, sino también mejorar la eficiencia energética. La siguiente generación de sistemas requiere mejorar un orden de magnitud en ambas métricas simultáneamente. Esta tesis doctoral explora optimizaciones específicas para sistemas CAP para hacer un mejor uso de los transistores, y para mejorar las prestaciones de forma transparente ejecutando las aplicaciones en múltiples aceleradores en paralelo. Primero, analizamos varios conjuntos de aplicaciones CAP, y las comparamos con aplicaciones para servidores y escritorio, identificando las principales diferencias que nos indican cómo ajustar la arquitectura para CAP. En las aplicaciones CAP, también analizamos la parte secuencial del código y la parte paralela de forma separada, . El resultado de este análisis nos lleva a proponer una arquitectura multiprocesador asimétrica (ACMP) , con un procesador optimizado para el código secuencial, y múltiples procesadores, más pequeños, optimizados para el procesamiento paralelo. Nuestros resultados muestran que reducir el tamaño de las estructuras del front-end (fetch, y predicción de saltos) en los procesadores paralelos nos proporciona un 16% extra de área en el chip, y una reducción de consumo del 7%. Como mejora a nuestra arquitectura ACMP, proponemos explotar el hecho de que todos los procesadores paralelos ejecutan el mismo código al mismo tiempo. Evaluamos una propuesta en que los procesadores paralelos comparten la caché de instrucciones, con la intención de que uno de ellos precargue las instrucciones para los demás procesadores (prefetching), sin aumentar la latencia media de acceso. Nuestra exploración de los distintos parámetros determina que el punto óptimo requiere una interconexión de alto ancho de banda para acceder a la caché compartida, y el uso de unos pocos line buffers para mantener el ancho de banda y la latencia necesarios. Nuestras proyecciones muestran un ahorro adicional del 11% en área y el 5% en energía, sin impacto en el rendimiento. Estos ahorros de área y energía permiten a un multiprocesador incrementar la eficiencia energética, o aumentar el rendimiento añadiendo procesador adicionales. Por último, estudiamos el efecto de usar múltiples aceleradores (GPU) en una arquitectura con tiempo de acceso a memoria no uniforme (NUMA). Una vez alcanzado el límite de número de transistores y tamaño máximo por chip, la siguiente generación de aceleradores deberá utilizar múltiples chips para aumentar el número de procesadores y el ancho de banda de acceso a memoria. Sin embargo, es muy difícil mantener la ilusión de un tiempo de acceso a memoria uniforme en un sistema multi-GPU sin reescribir el código de la aplicación. Nuestra investigación sobre sistemas multi-GPU muestra retos significativos en el diseño de la interconexión entre las GPU y la jerarquía de memorias cache. Nuestros resultados muestran que se puede explotar el comportamiento en fases de las aplicaciones para optimizar la configuración de la interconexión y las cachés de forma dinámica, minimizando el impacto de la arquitectura NUMA. Nuestro diseño mejora el rendimiento de un sistema con una única GPU en 1.5x, 2.3x y 3.2x (el 89%, 84%, y 76% del máximo teórico) usando 2, 4, y 8 GPUs en paralelo. Siendo su implementación posible hoy en dia, los nodos de cálculo con múltiples aceleradores son una alternativa atractiva para futuros sistemas CAP

A Quantitative Approach for Adopting Disaggregated Memory in HPC Systems

Memory disaggregation has recently been adopted in data centers to improve resource utilization, motivated by cost and sustainability. Recent studies on large-scale HPC facilities have also highlighted memory underutilization. A promising and non-disruptive option for memory disaggregation is rack-scale memory pooling, where shared memory pools supplement node-local memory. This work outlines the prospects and requirements for adoption and clarifies several misconceptions. We propose a quantitative method for dissecting application requirements on the memory system from the top down in three levels, moving from general, to multi-tier memory systems, and then to memory pooling. We provide a multi-level profiling tool and LBench to facilitate the quantitative approach. We evaluate a set of representative HPC workloads on an emulated platform. Our results show that prefetching activities can significantly influence memory traffic profiles. Interference in memory pooling has varied impacts on applications, depending on their access ratios to memory tiers and arithmetic intensities. Finally, in two case studies, we show the benefits of our findings at the application and system levels, achieving 50% reduction in remote access and 13% speedup in BFS, and reducing performance variation of co-located workloads in interference-aware job scheduling.Comment: Accepted to SC23 (The International Conference for High Performance Computing, Networking, Storage, and Analysis 2023

E-AMOM: An Energy-Aware Modeling and Optimization Methodology for Scientific Applications on Multicore Systems

Power consumption is an important constraint in achieving efficient execution on High Performance Computing Multicore Systems. As the number of cores available on a chip continues to increase, the importance of power consumption will continue to grow. In order to achieve improved performance on multicore systems scientific applications must make use of efficient methods for reducing power consumption and must further be refined to achieve reduced execution time. In this dissertation, we introduce a performance modeling framework, E-AMOM, to enable improved execution of scientific applications on parallel multicore systems with regards to a limited power budget. We develop models for each application based upon performance hardware counters. Our models utilize different performance counters for each application and for each performance component (runtime, system power consumption, CPU power consumption, and memory power consumption) that are selected via our performance-tuned principal component analysis method. Models developed through E-AMOM provide insight into the performance characteristics of each application that affect performance for each component on a parallel multicore system. Our models are more than 92% accurate across both Hybrid (MPI/OpenMP) and MPI implementations for six scientific applications. E-AMOM includes an optimization component that utilizes our models to employ run-time Dynamic Voltage and Frequency Scaling (DVFS) and Dynamic Concurrency Throttling to reduce power consumption of the scientific applications. Further, we optimize our applications based upon insights provided by the performance models to reduce runtime of the applications. Our methods and techniques are able to save up to 18% in energy consumption for Hybrid (MPI/OpenMP) and MPI scientific applications and reduce the runtime of the applications up to 11% on parallel multicore systems