14,028 research outputs found
Commercial-off-the-shelf simulation package interoperability: Issues and futures
Commercial-Off-The-Shelf Simulation Packages (CSPs) are widely used in industry to simulate discrete-event models. Interoperability of CSPs requires the use of distributed simulation techniques. Literature presents us with many examples of achieving CSP interoperability using bespoke solutions. However, for the wider adoption of CSP-based distributed simulation it is essential that, first and foremost, a standard for CSP interoperability be created, and secondly, these standards are adhered to by the CSP vendors. This advanced tutorial is on an emerging standard relating to CSP interoperability. It gives an overview of this standard and presents case studies that implement some of the proposed standards. Furthermore, interoperability is discussed in relation to large and complex models developed using CSPs that require large amount of computing resources. It is hoped that this tutorial will inform the simulation community of the issues associated with CSP interoperability, the importance of these standards and its future
Towards a lightweight generic computational grid framework for biological research
Background: An increasing number of scientific research projects require access to large-scale computational resources. This is particularly true in the biological field, whether to facilitate the analysis of large high-throughput data sets, or to perform large numbers of complex simulations – a characteristic of the emerging field of systems biology. Results: In this paper we present a lightweight generic framework for combining disparate computational resources at multiple sites (ranging from local computers and clusters to established national Grid services). A detailed guide describing how to set up the framework is available from the following URL: http://igrid-ext.cryst.bbk.ac.uk/portal_guide/. Conclusion: This approach is particularly (but not exclusively) appropriate for large-scale biology projects with multiple collaborators working at different national or international sites. The framework is relatively easy to set up, hides the complexity of Grid middleware from the user, and provides access to resources through a single, uniform interface. It has been developed as part of the European ImmunoGrid project
AstroGrid-D: Enhancing Astronomic Science with Grid Technology
We present AstroGrid-D, a project bringing together astronomers and experts in Grid technology to enhance astronomic science in many aspects. First, by sharing currently dispersed resources, scientists can calculate their models in more detail. Second, by developing new mechanisms to efficiently access and process existing datasets, scientific problems can be investigated that were until now impossible to solve. Third, by adopting Grid technology large instruments such as robotic telescopes and complex scientific workflows from data aquisition to analysis can be managed in an integrated manner. In this paper, we present prominent astronomic use cases, discuss requirements on a Grid middleware and present our approach to extend/augment existing middleware to facilitate the improvements mentioned above
AstroGrid-D: Grid Technology for Astronomical Science
We present status and results of AstroGrid-D, a joint effort of
astrophysicists and computer scientists to employ grid technology for
scientific applications. AstroGrid-D provides access to a network of
distributed machines with a set of commands as well as software interfaces. It
allows simple use of computer and storage facilities and to schedule or monitor
compute tasks and data management. It is based on the Globus Toolkit middleware
(GT4). Chapter 1 describes the context which led to the demand for advanced
software solutions in Astrophysics, and we state the goals of the project. We
then present characteristic astrophysical applications that have been
implemented on AstroGrid-D in chapter 2. We describe simulations of different
complexity, compute-intensive calculations running on multiple sites, and
advanced applications for specific scientific purposes, such as a connection to
robotic telescopes. We can show from these examples how grid execution improves
e.g. the scientific workflow. Chapter 3 explains the software tools and
services that we adapted or newly developed. Section 3.1 is focused on the
administrative aspects of the infrastructure, to manage users and monitor
activity. Section 3.2 characterises the central components of our architecture:
The AstroGrid-D information service to collect and store metadata, a file
management system, the data management system, and a job manager for automatic
submission of compute tasks. We summarise the successfully established
infrastructure in chapter 4, concluding with our future plans to establish
AstroGrid-D as a platform of modern e-Astronomy.Comment: 14 pages, 12 figures Subjects: data analysis, image processing,
robotic telescopes, simulations, grid. Accepted for publication in New
Astronom
BioNessie - a grid enabled biochemical networks simulation environment
The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scale simulations
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'BioNessie(G) - a grid enabled biochemical networks simulation environment
The simulation of biochemical networks provides insight and
understanding about the underlying biochemical processes and pathways
used by cells and organisms. BioNessie is a biochemical network simulator
which has been developed at the University of Glasgow. This paper
describes the simulator and focuses in particular on how it has been
extended to benefit from a wide variety of high performance compute resources
across the UK through Grid technologies to support larger scale
simulations
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