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XSPARQL: Traveling between the XML and RDF worlds - and avoiding the XSLT Pilgrimage
XML for Domain Viewpoints
Within research institutions like CERN (European Organization for Nuclear
Research) there are often disparate databases (different in format, type and
structure) that users need to access in a domain-specific manner. Users may
want to access a simple unit of information without having to understand detail
of the underlying schema or they may want to access the same information from
several different sources. It is neither desirable nor feasible to require
users to have knowledge of these schemas. Instead it would be advantageous if a
user could query these sources using his or her own domain models and
abstractions of the data. This paper describes the basis of an XML (eXtended
Markup Language) framework that provides this functionality and is currently
being developed at CERN. The goal of the first prototype was to explore the
possibilities of XML for data integration and model management. It shows how
XML can be used to integrate data sources. The framework is not only applicable
to CERN data sources but other environments too.Comment: 9 pages, 6 figures, conference report from SCI'2001 Multiconference
on Systemics & Informatics, Florid
Identification of Design Principles
This report identifies those design principles for a (possibly new) query and transformation
language for the Web supporting inference that are considered essential. Based upon these
design principles an initial strawman is selected. Scenarios for querying the Semantic Web
illustrate the design principles and their reflection in the initial strawman, i.e., a first draft of
the query language to be designed and implemented by the REWERSE working group I4
WSMO-lite annotations for web services
and other research output
Towards structured sharing of raw and derived neuroimaging data across existing resources
Data sharing efforts increasingly contribute to the acceleration of
scientific discovery. Neuroimaging data is accumulating in distributed
domain-specific databases and there is currently no integrated access mechanism
nor an accepted format for the critically important meta-data that is necessary
for making use of the combined, available neuroimaging data. In this
manuscript, we present work from the Derived Data Working Group, an open-access
group sponsored by the Biomedical Informatics Research Network (BIRN) and the
International Neuroimaging Coordinating Facility (INCF) focused on practical
tools for distributed access to neuroimaging data. The working group develops
models and tools facilitating the structured interchange of neuroimaging
meta-data and is making progress towards a unified set of tools for such data
and meta-data exchange. We report on the key components required for integrated
access to raw and derived neuroimaging data as well as associated meta-data and
provenance across neuroimaging resources. The components include (1) a
structured terminology that provides semantic context to data, (2) a formal
data model for neuroimaging with robust tracking of data provenance, (3) a web
service-based application programming interface (API) that provides a
consistent mechanism to access and query the data model, and (4) a provenance
library that can be used for the extraction of provenance data by image
analysts and imaging software developers. We believe that the framework and set
of tools outlined in this manuscript have great potential for solving many of
the issues the neuroimaging community faces when sharing raw and derived
neuroimaging data across the various existing database systems for the purpose
of accelerating scientific discovery
Approaches to Semantic Web Services: An Overview and Comparison
Abstract. The next Web generation promises to deliver Semantic Web Services (SWS); services that are self-described and amenable to automated discovery, composition and invocation. A prerequisite to this, however, is the emergence and evolution of the Semantic Web, which provides the infrastructure for the semantic interoperability of Web Services. Web Services will be augmented with rich formal descriptions of their capabilities, such that they can be utilized by applications or other services without human assistance or highly constrained agreements on interfaces or protocols. Thus, Semantic Web Services have the potential to change the way knowledge and business services are consumed and provided on the Web. In this paper, we survey the state of the art of current enabling technologies for Semantic Web Services. In addition, we characterize the infrastructure of Semantic Web Services along three orthogonal dimensions: activities, architecture and service ontology. Further, we examine and contrast three current approaches to SWS according to the proposed dimensions
Using Semantic Web Technology to Automate Data Integration in Grid and Web Service Architectures
While the Grid and Web Services have helped us support heterogeneous resource access through the use of service oriented architectures, they have not addressed the issue of heterogeneous data representation. Since service providers often describe their service interfaces using different data models than those assumed by the client, it is common for additional processing to be required to compensate for the mismatch in data formats. By utilising technology from the Semantic Web, we are able to augment existing Web Service systems with middleware to automatically perform data harmonisation when a syntactic mismatch occurs. To achieve this, we have developed a mapping language which can be used to annotate XML data structures with OWL concepts and properties, a Mapping Language Engine to implement this language, and a Dynamic Web Service Invocation component to execute Web Services
Ontology-based composition and matching for dynamic cloud service coordination
Recent cross-organisational software service offerings, such as cloud computing, create higher integration needs.
In particular, services are combined through brokers and mediators, solutions to allow individual services to collaborate and their interaction to be coordinated are required. The need to address dynamic management - caused by cloud and on-demand environments - can be addressed through service coordination based on ontology-based composition and matching techniques. Our solution to composition and matching utilises a service coordination space that acts as a passive infrastructure for collaboration where users submit requests that are then selected and taken on by providers. We discuss the information models and the coordination principles of such a collaboration environment in terms of an ontology and its underlying description logics. We provide ontology-based solutions for structural composition of descriptions and matching between requested and provided services
An Ontology Based Method to Solve Query Identifier Heterogeneity in Post-Genomic Clinical Trials
The increasing amount of information available for biomedical research has led to issues related to knowledge discovery in large collections of data. Moreover, Information Retrieval techniques must consider heterogeneities present in databases, initially belonging to different domains—e.g. clinical and genetic data. One of the goals, among others, of the ACGT European is to provide seamless and homogeneous access to integrated databases. In this work, we describe an approach to overcome heterogeneities in identifiers inside queries. We present an ontology classifying the most common identifier semantic heterogeneities, and a service that makes use of it to cope with the problem using the described approach. Finally, we illustrate the solution by analysing a set of real queries
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